Non-Coding RNA Search

Ss1.1-rspc013_o17.5

Sequence:


               
               CCGCTACTTCAGCGCCTGGGCGATATCGCTCAGGCTCTCCCTCTAGAAAGTCTTGGACCT
GTTGTGGGAAATTGTTCCAGAGCTACCAGGCTCATTTCTCACCTACCTTGGAATAAAACA
CCTCTTGTGAAGTAAGAAGGAGGATTTTCTAGGAACAGAATCCCACGTGTAAGAGAACCA
CTCCACCACTTGAATGAGTTTTTCAGCAGAAACAGTAGTTCCAGAGAGGAGCCGATCCCA
GGTTACTGACACCTGCCCAGCCTATACCTTCAGAGATTTCAGCATTTTTCCAAGACCAGC
AAAATATGAAGAAATTCTATCTTTCCTTATCATTTGAGGATGTGACTGTGGGCTTCACCC
AGGAGGAGTGGCAGCAACTGGACCCTGTTCAGAGGACCCTGTATAGGGACGTGATGCTGG
AGAACTATAGTCACCTCATCTCAGTGGGGTATTGCATCCCTAAACCAGAACTGATCTTCA
GGTTGGAACAGGGAGAGCAACCATGGATATTAGAGGAAGAGTCCCCAAGCCAGAGCTACC
CAGGCGTCTGCAGAGTTGATAACCAACTAGAACAGAGTCAGGAAATCCAGAACAGACAAT
TCTGGCAAGCTCCACTTATCAACAACAACGCATTGACTATAGAGAGAGGTTGAATGAGCA
AGCTGGAGACCCAGTTCAAGTCTGCAGGCAGGAAAAAGCCAGTGTCCCAGTTTGAAGATG
GCTAGGCAGGAGGAATTCTCTCTTCCTCAAAGGTATCTGCAAATCAATCAATGTGATATA
TATACCACAGTAACAAACTGAAGAATGAAAATCATACAGTCATCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCTACTTCAGCGCCTGGGCGATATCGCTCAGGCTCTCCCTCTAGAAAGTCTTGGACCT
GTTGTGGGAAATTGTTCCAGAGCTACCAGGCTCATTTCTCACCTACCTTGGAATAAAACA
CCTCTTGTGAAGTAAGAAGGAGGATTTTCTAGGAACAGAATCCCACGTGTAAGAGAACCA
CTCCACCACTTGAATGAGTTTTTCAGCAGAAACAGTAGTTCCAGAGAGGAGCCGATCCCA
GGTTACTGACACCTGCCCAGCCTATACCTTCAGAGATTTCAGCATTTTTCCAAGACCAGC
AAAATATGAAGAAATTCTATCTTTCCTTATCATTTGAGGATGTGACTGTGGGCTTCACCC
AGGAGGAGTGGCAGCAACTGGACCCTGTTCAGAGGACCCTGTATAGGGACGTGATGCTGG
AGAACTATAGTCACCTCATCTCAGTGGGGTATTGCATCCCTAAACCAGAACTGATCTTCA
GGTTGGAACAGGGAGAGCAACCATGGATATTAGAGGAAGAGTCCCCAAGCCAGAGCTACC
CAGGCGTCTGCAGAGTTGATAACCAACTAGAACAGAGTCAGGAAATCCAGAACAGACAAT
TCTGGCAAGCTCCACTTATCAACAACAACGCATTGACTATAGAGAGAGGTTGAATGAGCA
AGCTGGAGACCCAGTTCAAGTCTGCAGGCAGGAAAAAGCCAGTGTCCCAGTTTGAAGATG
GCTAGGCAGGAGGAATTCTCTCTTCCTCAAAGGTATCTGCAAATCAATCAATGTGATATA
TATACCACAGTAACAAACTGAAGAATGAAAATCATACAGTCATCTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55662765|emb|CAC16114.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55662765|emb|CAC16114.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               324-563, + strand, RNAz p=0.980147

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               324-563, + strand, RNAz p=0.980147

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               324-648, gnl|bosTau2|chr6 (33795572-33795248)
               


               
               331-477, gnl|bosTau2|chr18 (42728281-42728131)
               

               
               331-477, gnl|Hg17|chr10 (38443699-38443820)
               

               
               331-477, gnl|Mm7|chr13 (65092592-65092462)
               


               
               339-448, gnl|bosTau2|chr13 (22119008-22119117)
               

               
               339-448, gnl|Hg17|chr20 (18234343-18234452)
               

               
               339-448, gnl|Mm7|chr13 (47981707-47981598)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               324-648, gnl|bosTau2|chr6 (33795572-33795248)
               


               
               331-477, gnl|bosTau2|chr18 (42728281-42728131)
               

               
               331-477, gnl|Hg17|chr10 (38443699-38443820)
               

               
               331-477, gnl|Mm7|chr13 (65092592-65092462)
               


               
               339-448, gnl|bosTau2|chr13 (22119008-22119117)
               

               
               339-448, gnl|Hg17|chr20 (18234343-18234452)
               

               
               339-448, gnl|Mm7|chr13 (47981707-47981598)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spc (0.113366)

	324-648, gnl\|bosTau2\|chr6 (33795572-33795248)

	331-477, gnl\|bosTau2\|chr18 (42728281-42728131)
	331-477, gnl\|Hg17\|chr10 (38443699-38443820)
	331-477, gnl\|Mm7\|chr13 (65092592-65092462)

	339-448, gnl\|bosTau2\|chr13 (22119008-22119117)
	339-448, gnl\|Hg17\|chr20 (18234343-18234452)
	339-448, gnl\|Mm7\|chr13 (47981707-47981598)