Non-Coding RNA Search

Ss1.1-rspc013_p18.5

Sequence:


               
               GCCCCACAACGGGTCCGGGCTCGCATTTCAATGGATTAAACCAGACCGTGTTGAACCGAG
CGGACGCTTTGGCTAAAGACCCGAAAATGTTGCGGAGCCAGTCCCAGCTAGACCTGTGCA
AAGACTCTCCCTATGAATTGAAGAAAGGTATGTCCGACATTTAACGCGGGCTGCGTCGGT
CCTGGACTTTCCTAATTTATTAAAAAACATGGCCTTGGCAGTTATTTTTCCATCAACATG
AGAGAAAAGCAAAACTATCCCTCCTACTAAAAAGTTTATAGTTCATGGAGATGGATGACA
TAAAAATGTAAACATCTCCACACACACACACACACACACACACACACACACACACAAATG
TCTTAACCAACCTAAAAGAAAAATTTAAAAAAGGATTTGTATTAAATCTTATTCTGTATA
TTTAATGTAGCATTTTTGTATTTAAATTGATAATTCAATATCTTTGAAGTAAATTATGAA
ATTAAGACACCTGTACAGGCATTTAATGTTTTTTTGTAATATAAATATATACATTTGTGT
TTCCCCCCAAACTGTTTCATAGTTTAAAGATACAAGTTTAATTTAATTTTTTACACCTAT
TGATTTTTCTGGGTATGAGCTAAAGTATTATTACGGAAAAGAAACAGGTTATACTCTTAG
ATTTAAAAAGTAAAAGAAAACTGCAGCCGCCTTTGTAAAATGCAAAATATTTAATTAAAA
GAGATTTTAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCACAACGGGTCCGGGCTCGCATTTCAATGGATTAAACCAGACCGTGTTGAACCGAG
CGGACGCTTTGGCTAAAGACCCGAAAATGTTGCGGAGCCAGTCCCAGCTAGACCTGTGCA
AAGACTCTCCCTATGAATTGAAGAAAGGTATGTCCGACATTTAACGCGGGCTGCGTCGGT
CCTGGACTTTCCTAATTTATTAAAAAACATGGCCTTGGCAGTTATTTTTCCATCAACATG
AGAGAAAAGCAAAACTATCCCTCCTACTAAAAAGTTTATAGTTCATGGAGATGGATGACA
TAAAAATGTAAACATCTCCACACACACACACACACACACACACACACACACACACAAATG
TCTTAACCAACCTAAAAGAAAAATTTAAAAAAGGATTTGTATTAAATCTTATTCTGTATA
TTTAATGTAGCATTTTTGTATTTAAATTGATAATTCAATATCTTTGAAGTAAATTATGAA
ATTAAGACACCTGTACAGGCATTTAATGTTTTTTTGTAATATAAATATATACATTTGTGT
TTCCCCCCAAACTGTTTCATAGTTTAAAGATACAAGTTTAATTTAATTTTTTACACCTAT
TGATTTTTCTGGGTATGAGCTAAAGTATTATTACGGAAAAGAAACAGGTTATACTCTTAG
ATTTAAAAAGTAAAAGAAAACTGCAGCCGCCTTTGTAAAATGCAAAATATTTAATTAAAA
GAGATTTTAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-330, - strand, RNAz p=0.999537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-330, - strand, RNAz p=0.999537

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               252-318, BX118068 Soares_fetal_lung_NbHL19W Homo sapiens cDNA clone 
(emb|BX118068.1|), blast E-value=1e-16, identity=92.54% 
               

               
               252-318, UI-H-EZ1-bbi-c-10-0-UI.s1 NCI_CGAP_Ch2 Homo sapiens cDNA clone 
(gb|CA418934.1|), blast E-value=1e-16, identity=92.54% 
               

               
               252-318, 17000425253054 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN283788.1|), blast E-value=1e-16, identity=92.54% 
               

               
               210-318, 001004BEMN037726HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY081247.1|), blast E-value=3.00018e-42, identity=96.36% 
               

               
               214-318, 000908BEMN010890HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY165883.1|), blast E-value=5.04467e-44, identity=97.14% 
               

               
               252-318, 180165 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|DY753202.1|), blast E-value=1e-16, identity=92.54%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               252-318, BX118068 Soares_fetal_lung_NbHL19W Homo sapiens cDNA clone 
(emb|BX118068.1|), blast E-value=1e-16, identity=92.54% 
               

               
               252-318, UI-H-EZ1-bbi-c-10-0-UI.s1 NCI_CGAP_Ch2 Homo sapiens cDNA clone 
(gb|CA418934.1|), blast E-value=1e-16, identity=92.54% 
               

               
               252-318, 17000425253054 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN283788.1|), blast E-value=1e-16, identity=92.54% 
               

               
               210-318, 001004BEMN037726HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY081247.1|), blast E-value=3.00018e-42, identity=96.36% 
               

               
               214-318, 000908BEMN010890HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY165883.1|), blast E-value=5.04467e-44, identity=97.14% 
               

               
               252-318, 180165 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|DY753202.1|), blast E-value=1e-16, identity=92.54%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-330, gnl|bosTau2|chr18 (24376993-24376657)
               

               
               1-330, gnl|Hg17|chr16 (53525123-53525463)
               

               
               1-330, gnl|Mm7|chr8 (90953983-90954319)
               


               
               343-732, gnl|bosTau2|chr18 (24376668-24376275)
               

               
               343-732, gnl|Hg17|chr16 (53525452-53525836)
               

               
               343-732, gnl|Mm7|chr8 (90954309-90954703)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-330, gnl|bosTau2|chr18 (24376993-24376657)
               

               
               1-330, gnl|Hg17|chr16 (53525123-53525463)
               

               
               1-330, gnl|Mm7|chr8 (90953983-90954319)
               


               
               343-732, gnl|bosTau2|chr18 (24376668-24376275)
               

               
               343-732, gnl|Hg17|chr16 (53525452-53525836)
               

               
               343-732, gnl|Mm7|chr8 (90954309-90954703)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cga (0.279096)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

	252-318, BX118068 Soares_fetal_lung_NbHL19W Homo sapiens cDNA clone (emb\|BX118068.1\|), blast E-value=1e-16, identity=92.54%
	252-318, UI-H-EZ1-bbi-c-10-0-UI.s1 NCI_CGAP_Ch2 Homo sapiens cDNA clone (gb\|CA418934.1\|), blast E-value=1e-16, identity=92.54%
	252-318, 17000425253054 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN283788.1\|), blast E-value=1e-16, identity=92.54%
	210-318, 001004BEMN037726HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY081247.1\|), blast E-value=3.00018e-42, identity=96.36%
	214-318, 000908BEMN010890HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY165883.1\|), blast E-value=5.04467e-44, identity=97.14%
	252-318, 180165 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb\|DY753202.1\|), blast E-value=1e-16, identity=92.54%

	1-330, gnl\|bosTau2\|chr18 (24376993-24376657)
	1-330, gnl\|Hg17\|chr16 (53525123-53525463)
	1-330, gnl\|Mm7\|chr8 (90953983-90954319)

	343-732, gnl\|bosTau2\|chr18 (24376668-24376275)
	343-732, gnl\|Hg17\|chr16 (53525452-53525836)
	343-732, gnl\|Mm7\|chr8 (90954309-90954703)

	cga (0.279096)
	ova (0.258264)
	tra (0.246184)
	cbe (0.239234)
	mgp (0.230681)
	mgm (0.180343)
	ski (0.146735)
	pty (0.142714)
	csk (0.140746)
	lyg (0.133103)
	spc (0.113366)