Ss1.1-rspc014_b18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCTCCCCTGTTCTCTCTAGGCCCCCATCTCCCCTGCCGGGCAGAGGGGCACCGACCGC CACCATGAGTTCCTTCAGCTACGAGCCGTACTACTCGACCTCCTACAAACGCCGCTATGT GGAGACGCCCCGGGTGCACATCTCCAGCGTGCGCAGCGGCTACAGCACCGCGCGCTCTGC TTACTCCAGCTACTCCGCGCCCGTCTCCTCCTCGCTGTCCGTGCGCCGCAGCTACTCCTC CAGCTCCGGCTCCTTGATGCCCAGTCTCGAGAACCTCGACCTGAGCCAGGTAGCCGCCAT CAGCAACGACCTCAAGTCGATCCGCACACAGGAGAAGGCGCAGCTGCAGGACCTCAACGA CCGCTTTGCCAGCTTCATCGAGCGCGTGCACGAGTTGGAGCAGCAGAACAAGGTCCTGGA AGCCGAGCTGCTGGTGCTGCGCCAGAAGCACTCCGAGCCGTCCCGCTTCCGGGCGCTGTA CGAGCAGGAGATCCGTGACCTGCGCCTGGCGGCGGAAGACGCCACCAACGAGAAGCAGGC GCTCCAGGGCGAGCGCGAGGGGCTGGAGGAGACTCTGCGCAACCTGCAAGCGCGCTACGA AGAGGAGGTGCTGAGCCGCGAGGACGCCGAGGGCCGGCTGATGGAAGCGCGCAAAGGGGC CGACGAGGCGGCTCTCGCCCGCGCCGAGCTCGAAAAGCGCATTGACAGTCTGATGGACGA AATCGCCTTTCTGAAGAAAGTGCACGAAGAGGAGATCGCCGAGCTGCAGGCTCAGATCCA GTACGCGCAGATCTCCGTGGAGATGGATGTGTCCTCCAAGCCCGACCTCTCCGCCGCGCT CAAGGACATCCGCGCCCAGTATGAGAAGCTGGCCGCCAAGAACATGCAGAACGCCGAAGA GTGGTTCAAGAGCCGCTTCACGGTGCTGACCGAGAGCGCCGCCAAGAACACCGATGCGGT GCGCGCAGCCAAGGACGAGGTGTCCGAGAGCCGCCGACTGCTCAAGGCCAAGACCCTGGA GATCGAAGCCTGCCGGGGCATGAACGAAGCGCTGGAGAAGCAGCTGCAGGAGCTGGAGGA CAAGCAGAACGCCGACATTAGTGCTATGCAGGACACAATTAACAAATTAGAAAACGAACT GAGAACCACAAAGAGTGAAATGGCAAGATACCTGAAGGAATACCAAGACCTTCTCAATGT GAAGATGGCTTTGGACATTGAGATTGCAGCTTACAGGAAACTCTTGGAAGGTGAGGAGAC CCGGCTGAGTTTCACCAGCGTGGGAAGCTTAACCACTGGCTACTCTCAGAGCTCCCAGGT CTTTGGCCGATCTGCCTATGGCGGTTTACAGACCAGCTCCTACCTGATGTCCACCCGCTC CTTCCCATCATACTACACCAGCCACGTCCAGGAGGAGCAGATCGAGGTGGAGGAGACCAT TGAGGCTGCGAAAGCTGAGGAAGCCAAGGACGAACCTCCCTCTGAAGGAGAAGCCGAGGA GGAGGGCAAGGAGAAGGAAGAAGCTGAGGCAGAGGCTGAGGCTGAGGAAGAGGAAGGTGC CCAAGAAGAAGAAGAAGAAGCTGCCAAGGAAGAATCTGAGGAAGCAAAGGAGGAAGAAGA AGGAGGTGAAGGCGAAGAAGGAGAAGAAACCAAAGAAGCCGAGGAGGAGGAGAAAAAAGA TGAAGGTGCTGGGGAGGAGCAAGCAACTAAGAAGAAAGATTGAGCCCCACTTCCCTTATT TATTCCAGGAATAATTCTCCCGAAATCAGGTCAACCCCATCACCAACCAACCAGTTGAGT TGCAGATACTATATGAATTAAGAAGTCAATATATGTATAATTCTGAGATGACTTAGGTTG GACATTAAATGTTGTGCTATGACTTTTCTCCTTATGCAGAGTATCTGTTTGCTTGCAGAG TGGCTTCCTGGCTTGCTGCCAGCCTGTGCATGGTCCACGCTTATGAGTTCAGGATCTATG GCAATGTGAATAATTCAGATGTTTACAATTTAAAAAAATGAATAAATGAATTCACTAATG TTAATGTTAAACTTCATGGAAAAAAATAGTCCTTTGAAACTTTGGTGGTTAGAAATTAAA GACCTCAAATTATGTGCAATAAATAGTAAATAAAGTTACACTGAATGACAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCTCCCCTGTTCTCTCTAGGCCCCCATCTCCCCTGCCGGGCAGAGGGGCACCGACCGC CACCATGAGTTCCTTCAGCTACGAGCCGTACTACTCGACCTCCTACAAACGCCGCTATGT GGAGACGCCCCGGGTGCACATCTCCAGCGTGCGCAGCGGCTACAGCACCGCGCGCTCTGC TTACTCCAGCTACTCCGCGCCCGTCTCCTCCTCGCTGTCCGTGCGCCGCAGCTACTCCTC CAGCTCCGGCTCCTTGATGCCCAGTCTCGAGAACCTCGACCTGAGCCAGGTAGCCGCCAT CAGCAACGACCTCAAGTCGATCCGCACACAGGAGAAGGCGCAGCTGCAGGACCTCAACGA CCGCTTTGCCAGCTTCATCGAGCGCGTGCACGAGTTGGAGCAGCAGAACAAGGTCCTGGA AGCCGAGCTGCTGGTGCTGCGCCAGAAGCACTCCGAGCCGTCCCGCTTCCGGGCGCTGTA CGAGCAGGAGATCCGTGACCTGCGCCTGGCGGCGGAAGACGCCACCAACGAGAAGCAGGC GCTCCAGGGCGAGCGCGAGGGGCTGGAGGAGACTCTGCGCAACCTGCAAGCGCGCTACGA AGAGGAGGTGCTGAGCCGCGAGGACGCCGAGGGCCGGCTGATGGAAGCGCGCAAAGGGGC CGACGAGGCGGCTCTCGCCCGCGCCGAGCTCGAAAAGCGCATTGACAGTCTGATGGACGA AATCGCCTTTCTGAAGAAAGTGCACGAAGAGGAGATCGCCGAGCTGCAGGCTCAGATCCA GTACGCGCAGATCTCCGTGGAGATGGATGTGTCCTCCAAGCCCGACCTCTCCGCCGCGCT CAAGGACATCCGCGCCCAGTATGAGAAGCTGGCCGCCAAGAACATGCAGAACGCCGAAGA GTGGTTCAAGAGCCGCTTCACGGTGCTGACCGAGAGCGCCGCCAAGAACACCGATGCGGT GCGCGCAGCCAAGGACGAGGTGTCCGAGAGCCGCCGACTGCTCAAGGCCAAGACCCTGGA GATCGAAGCCTGCCGGGGCATGAACGAAGCGCTGGAGAAGCAGCTGCAGGAGCTGGAGGA CAAGCAGAACGCCGACATTAGTGCTATGCAGGACACAATTAACAAATTAGAAAACGAACT GAGAACCACAAAGAGTGAAATGGCAAGATACCTGAAGGAATACCAAGACCTTCTCAATGT GAAGATGGCTTTGGACATTGAGATTGCAGCTTACAGGAAACTCTTGGAAGGTGAGGAGAC CCGGCTGAGTTTCACCAGCGTGGGAAGCTTAACCACTGGCTACTCTCAGAGCTCCCAGGT CTTTGGCCGATCTGCCTATGGCGGTTTACAGACCAGCTCCTACCTGATGTCCACCCGCTC CTTCCCATCATACTACACCAGCCACGTCCAGGAGGAGCAGATCGAGGTGGAGGAGACCAT TGAGGCTGCGAAAGCTGAGGAAGCCAAGGACGAACCTCCCTCTGAAGGAGAAGCCGAGGA GGAGGGCAAGGAGAAGGAAGAAGCTGAGGCAGAGGCTGAGGCTGAGGAAGAGGAAGGTGC CCAAGAAGAAGAAGAAGAAGCTGCCAAGGAAGAATCTGAGGAAGCAAAGGAGGAAGAAGA AGGAGGTGAAGGCGAAGAAGGAGAAGAAACCAAAGAAGCCGAGGAGGAGGAGAAAAAAGA TGAAGGTGCTGGGGAGGAGCAAGCAACTAAGAAGAAAGATTGAGCCCCACTTCCCTTATT TATTCCAGGAATAATTCTCCCGAAATCAGGTCAACCCCATCACCAACCAACCAGTTGAGT TGCAGATACTATATGAATTAAGAAGTCAATATATGTATAATTCTGAGATGACTTAGGTTG GACATTAAATGTTGTGCTATGACTTTTCTCCTTATGCAGAGTATCTGTTTGCTTGCAGAG TGGCTTCCTGGCTTGCTGCCAGCCTGTGCATGGTCCACGCTTATGAGTTCAGGATCTATG GCAATGTGAATAATTCAGATGTTTACAATTTAAAAAAATGAATAAATGAATTCACTAATG TTAATGTTAAACTTCATGGAAAAAAATAGTCCTTTGAAACTTTGGTGGTTAGAAATTAAA GACCTCAAATTATGTGCAATAAATAGTAAATAAAGTTACACTGAATGACAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 334-1237, - strand, RNAz p=0.89822 | |
| 1118-1237, - strand, RNAz p=0.954349 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 334-1237, - strand, RNAz p=0.89822 | |
| 1118-1237, - strand, RNAz p=0.954349 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 275-1095, gnl|bosTau2|chr26 (17694498-17695324) | |
| 275-1095, gnl|Hg17|chr10 (105027181-105028007) | |
| 275-1095, gnl|Mm7|chr19 (46915474-46916300) | |
| 295-558, gnl|bosTau2|chr13 (19897206-19897463) | |
| 295-558, gnl|Hg17|chr10 (17311697-17311954) | |
| 295-558, gnl|Mm7|chr2 (13513859-13514116) | |
| 1102-1237, gnl|bosTau2|chr26 (17702963-17703098) | |
| 1102-1237, gnl|canFam2|chr28 (18683752-18683868) | |
| 1102-1237, gnl|danRer3|chr13 (28922128-28922033) | |
| 1102-1237, gnl|dasNov1|scaffold_23813 (15099-15215) | |
| 1102-1237, gnl|echTel1|scaffold_310648 (56425-56541) | |
| 1102-1237, gnl|fr1|chrUn (164454021-164454124) | |
| 1102-1237, gnl|galGal2|chr22 (941707-941828) | |
| 1102-1237, gnl|hg17|chr10 (105036759-105036875) | |
| 1102-1237, gnl|Hg17|chr10 (105036772-105036907) | |
| 1102-1237, gnl|loxAfr1|scaffold_2052 (107952-107836) | |
| 1102-1237, gnl|mm7|chr19 (46922308-46922423) | |
| 1102-1237, gnl|Mm7|chr19 (46922322-46922455) | |
| 1102-1237, gnl|monDom2|scaffold_14 (60006424-60006309) | |
| 1102-1237, gnl|oryCun1|scaffold_211718 (35237-35135) | |
| 1102-1237, gnl|panTro1|chr8 (106813078-106813191) | |
| 1102-1237, gnl|rheMac2|chr9 (102978324-102978440) | |
| 1102-1237, gnl|rn3|chr1 (252600980-252601095) | |
| 1102-1237, gnl|tetNig1|chr18 (5010869-5010755) | |
| 1102-1237, gnl|xenTro1|scaffold_87 (1221441-1221555) | |
| 1578-2149, gnl|bosTau2|chr8 (32208521-32209097) | |
| 1578-2149, gnl|canFam2|chr25 (35457375-35457020) | |
| 1578-2149, gnl|dasNov1|scaffold_1190 (77335-77690) | |
| 1578-2149, gnl|echTel1|scaffold_290188 (9237-8885) | |
| 1578-2149, gnl|galGal2|chr22 (944726-944371) | |
| 1578-2149, gnl|Hg17|chr8 (24866385-24865808) | |
| 1578-2149, gnl|hg17|chrY (21720682-21721042) | |
| 1578-2149, gnl|mm7|chr14 (62946571-62946196) | |
| 1578-2149, gnl|Mm7|chr14 (62945983-62946567) | |
| 1578-2149, gnl|monDom2|scaffold_61 (7814148-7813780) | |
| 1578-2149, gnl|panTro1|chrY (22631166-22631526) | |
| 1578-2149, gnl|rheMac2|chr8 (25075274-25075632) | |
| 1578-2149, gnl|rn3|chr15 (47656074-47655698) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 275-1095, gnl|bosTau2|chr26 (17694498-17695324) | |
| 275-1095, gnl|Hg17|chr10 (105027181-105028007) | |
| 275-1095, gnl|Mm7|chr19 (46915474-46916300) | |
| 295-558, gnl|bosTau2|chr13 (19897206-19897463) | |
| 295-558, gnl|Hg17|chr10 (17311697-17311954) | |
| 295-558, gnl|Mm7|chr2 (13513859-13514116) | |
| 1102-1237, gnl|bosTau2|chr26 (17702963-17703098) | |
| 1102-1237, gnl|canFam2|chr28 (18683752-18683868) | |
| 1102-1237, gnl|danRer3|chr13 (28922128-28922033) | |
| 1102-1237, gnl|dasNov1|scaffold_23813 (15099-15215) | |
| 1102-1237, gnl|echTel1|scaffold_310648 (56425-56541) | |
| 1102-1237, gnl|fr1|chrUn (164454021-164454124) | |
| 1102-1237, gnl|galGal2|chr22 (941707-941828) | |
| 1102-1237, gnl|hg17|chr10 (105036759-105036875) | |
| 1102-1237, gnl|Hg17|chr10 (105036772-105036907) | |
| 1102-1237, gnl|loxAfr1|scaffold_2052 (107952-107836) | |
| 1102-1237, gnl|mm7|chr19 (46922308-46922423) | |
| 1102-1237, gnl|Mm7|chr19 (46922322-46922455) | |
| 1102-1237, gnl|monDom2|scaffold_14 (60006424-60006309) | |
| 1102-1237, gnl|oryCun1|scaffold_211718 (35237-35135) | |
| 1102-1237, gnl|panTro1|chr8 (106813078-106813191) | |
| 1102-1237, gnl|rheMac2|chr9 (102978324-102978440) | |
| 1102-1237, gnl|rn3|chr1 (252600980-252601095) | |
| 1102-1237, gnl|tetNig1|chr18 (5010869-5010755) | |
| 1102-1237, gnl|xenTro1|scaffold_87 (1221441-1221555) | |
| 1578-2149, gnl|bosTau2|chr8 (32208521-32209097) | |
| 1578-2149, gnl|canFam2|chr25 (35457375-35457020) | |
| 1578-2149, gnl|dasNov1|scaffold_1190 (77335-77690) | |
| 1578-2149, gnl|echTel1|scaffold_290188 (9237-8885) | |
| 1578-2149, gnl|galGal2|chr22 (944726-944371) | |
| 1578-2149, gnl|Hg17|chr8 (24866385-24865808) | |
| 1578-2149, gnl|hg17|chrY (21720682-21721042) | |
| 1578-2149, gnl|mm7|chr14 (62946571-62946196) | |
| 1578-2149, gnl|Mm7|chr14 (62945983-62946567) | |
| 1578-2149, gnl|monDom2|scaffold_61 (7814148-7813780) | |
| 1578-2149, gnl|panTro1|chrY (22631166-22631526) | |
| 1578-2149, gnl|rheMac2|chr8 (25075274-25075632) | |
| 1578-2149, gnl|rn3|chr15 (47656074-47655698) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| spc (8.84254) | |
| fco (0.78604) | |
| fbs (0.701385) | |
| sug (0.636456) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| hyp (0.42851) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (8.84254) | |
| fco (0.78604) | |
| fbs (0.701385) | |
| sug (0.636456) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| hyp (0.42851) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) |