Non-Coding RNA Search

Ss1.1-rspc014_c13.5

Sequence:


               
               GGTCTCCGCCTCTTAAGACAAGGCAGCTTCAAAGGCCCATGTCCCAGGAAGGGCCTCTTC
CAGACAGATCAGAGGCCATGGGGAGGAGAGTTAAAATGACCTCATATTCTTCTTGTCTTT
AGCTCTGTTGAGTTTTTCTGAGCTCTTAATGCAAGGGTCTCACACTGTGAACCGCTTAGG
AGGAGATGGCCTCAGATGGCTGGGAATGTTGACTGTTTTTGGTTCAGGAACGTTGCCTGT
CATGGAAAAGATATCTATTTGAAAATCCTCAGAGTTGTCCATATGTCTAACAGCACAGGA
TCTGTGCCGAAGACTCTCCTTCTAAACCATTCACCAAGAGCCAAGTCCAGGCATGTTCTT
GGTAGCACAAATTTTTTTAATGGCTTAGAAAATTGTTCTTGTTATTCTGTTTGCAAGCAT
CAAAATGAGTTAGGCCTTAAAAACAAACAAACAAAACAAAACAAAACAAAAACACACTCC
TCTGAAATGCGTGTCTTTTTCCTGTTGCCGAAATAGCTGGTCCTTTTTCGGGAATTAGAT
GTACAGCGTGTTTTGTATGTAAACATTTCTTGTAGGCGTCACCACCGTGAACAAAGATAT
ATTTTTTATTTATTTATTCTATATGCACTTCGAGAAGTCGTTGTCAGAGAAATGAAGAAT
TGTCTTAAATGTCATGTTTGGGGATGTCCTTTGGACCGCTTGAAAGGGGTATACCCAGAG
CCTTCTGCTTGCAGCAGAGGCCATCGGCTCTGATTTGGAAAATCTTGCTGTACCATAGTA
AACACACAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTCCGCCTCTTAAGACAAGGCAGCTTCAAAGGCCCATGTCCCAGGAAGGGCCTCTTC
CAGACAGATCAGAGGCCATGGGGAGGAGAGTTAAAATGACCTCATATTCTTCTTGTCTTT
AGCTCTGTTGAGTTTTTCTGAGCTCTTAATGCAAGGGTCTCACACTGTGAACCGCTTAGG
AGGAGATGGCCTCAGATGGCTGGGAATGTTGACTGTTTTTGGTTCAGGAACGTTGCCTGT
CATGGAAAAGATATCTATTTGAAAATCCTCAGAGTTGTCCATATGTCTAACAGCACAGGA
TCTGTGCCGAAGACTCTCCTTCTAAACCATTCACCAAGAGCCAAGTCCAGGCATGTTCTT
GGTAGCACAAATTTTTTTAATGGCTTAGAAAATTGTTCTTGTTATTCTGTTTGCAAGCAT
CAAAATGAGTTAGGCCTTAAAAACAAACAAACAAAACAAAACAAAACAAAAACACACTCC
TCTGAAATGCGTGTCTTTTTCCTGTTGCCGAAATAGCTGGTCCTTTTTCGGGAATTAGAT
GTACAGCGTGTTTTGTATGTAAACATTTCTTGTAGGCGTCACCACCGTGAACAAAGATAT
ATTTTTTATTTATTTATTCTATATGCACTTCGAGAAGTCGTTGTCAGAGAAATGAAGAAT
TGTCTTAAATGTCATGTTTGGGGATGTCCTTTGGACCGCTTGAAAGGGGTATACCCAGAG
CCTTCTGCTTGCAGCAGAGGCCATCGGCTCTGATTTGGAAAATCTTGCTGTACCATAGTA
AACACACAAAGG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.799896
               

               
               279-396, - strand, RNAz p=0.993904
               

               
               676-792, + strand, RNAz p=0.652419

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.799896
               

               
               279-396, - strand, RNAz p=0.993904
               

               
               676-792, + strand, RNAz p=0.652419

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-451, gnl|bosTau2|chr21 (19255641-19256088)
               

               
               1-451, gnl|Hg17|chr15 (79030416-79030858)
               

               
               1-451, gnl|Mm7|chr7 (79855171-79854736)
               


               
               463-792, gnl|bosTau2|chr21 (19256078-19256402)
               

               
               463-792, gnl|Hg17|chr15 (79030849-79031161)
               

               
               463-792, gnl|Mm7|chr7 (79854737-79854443)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-451, gnl|bosTau2|chr21 (19255641-19256088)
               

               
               1-451, gnl|Hg17|chr15 (79030416-79030858)
               

               
               1-451, gnl|Mm7|chr7 (79855171-79854736)
               


               
               463-792, gnl|bosTau2|chr21 (19256078-19256402)
               

               
               463-792, gnl|Hg17|chr15 (79030849-79031161)
               

               
               463-792, gnl|Mm7|chr7 (79854737-79854443)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               amn (0.835422)
               

               
               pla (0.267344)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               pla (0.267344)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	1-119, - strand, RNAz p=0.799896
	279-396, - strand, RNAz p=0.993904
	676-792, + strand, RNAz p=0.652419

	1-451, gnl\|bosTau2\|chr21 (19255641-19256088)
	1-451, gnl\|Hg17\|chr15 (79030416-79030858)
	1-451, gnl\|Mm7\|chr7 (79855171-79854736)

	463-792, gnl\|bosTau2\|chr21 (19256078-19256402)
	463-792, gnl\|Hg17\|chr15 (79030849-79031161)
	463-792, gnl\|Mm7\|chr7 (79854737-79854443)

	amn (0.835422)
	pla (0.267344)
	fbs (0.175346)
	hyp (0.142837)
	spc (0.113366)