Non-Coding RNA Search

Ss1.1-rspc014_i8.5

Sequence:


               
               TTTTTTACAAAGACCCTTTGTGTTTTTATATATTTCATAGAAAATTTTATACCAGTTGCA
GGTAAACTGTCAGGATGGGTTTTTAAACTATTTTTATAACGTTAAGATATTCTATAATTA
TGCATGTGATTTTTAACATTTAATATGCAAAACAAAATCTCTTGCTGGATTTGAGAGTAT
TGCATTTTAAAAGTCTCTCTTCTGTAACTGGATGTTGCGGCAACTTTGTGGGGAGAGACG
GCTGGGTTTCTTAAAGCCACGTATTACTGACACTGGCCACAGAATGCCTTTGGAAATCTG
ATGTACTGTTATTGCCTTGTTCCTGCTCAGTGATGTTGCGCTGTTTTGTGTTTGAACCGA
GCGATGCTGCGGATCAGGAGAGAAATGAATGTAGAGAGAGGCCGAGAGAGAAATACAGAC
TCTAACGGGGGATTAAGGAGGGTAGTCTGCTGGTTCAGGCTCCTCGAAGGAAGTGGAGAA
AGGGGGTAGAAGGAACCACCTCTGCTGAAAATACTGTAAATACACAGTGAGAGTTGCAAA
GTCAGTCCCGTGTTATTTGCTTCTGGAATCCATTTCAAAAACCCCAGGAGGGAAAAAAAA
ATAATAAGAACAACATTTTTATCCTTTTCTACAGAAATCAAAATGAATAGCATCCAATTA
TTTGGGGCAGAAATCACATAATGTATGATGTGACTTTGAGTGAAATAAATGCCATTTGGA
AAGGAGTTTGCAGACGCTCCCCCAAAAGCCCATCTCTGTGTGGTAAGAATGTGTGATGAG
GTTAAATTTCTGTTTCATGAAACCTGTTTGGGGATTCACAAGGGATAAGGGTCTCATATC
AGTGTAACACAGGTAGTTACAAAAATACGTTCTCGTACTGTGTAAAGATGCATAGTCATC
TAATTTGGTTGGCTTTGTACCTTAGACCTTTTTTTAAGCTTTTGCTGTACATCTGGACCC
CTCAGCACATACTGTGTTGTCCTTCCTTTTGTAAATGATTTTTTAAGTGGAATTTTGCAC
ATAATACATTGTAATACTGAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTACAAAGACCCTTTGTGTTTTTATATATTTCATAGAAAATTTTATACCAGTTGCA
GGTAAACTGTCAGGATGGGTTTTTAAACTATTTTTATAACGTTAAGATATTCTATAATTA
TGCATGTGATTTTTAACATTTAATATGCAAAACAAAATCTCTTGCTGGATTTGAGAGTAT
TGCATTTTAAAAGTCTCTCTTCTGTAACTGGATGTTGCGGCAACTTTGTGGGGAGAGACG
GCTGGGTTTCTTAAAGCCACGTATTACTGACACTGGCCACAGAATGCCTTTGGAAATCTG
ATGTACTGTTATTGCCTTGTTCCTGCTCAGTGATGTTGCGCTGTTTTGTGTTTGAACCGA
GCGATGCTGCGGATCAGGAGAGAAATGAATGTAGAGAGAGGCCGAGAGAGAAATACAGAC
TCTAACGGGGGATTAAGGAGGGTAGTCTGCTGGTTCAGGCTCCTCGAAGGAAGTGGAGAA
AGGGGGTAGAAGGAACCACCTCTGCTGAAAATACTGTAAATACACAGTGAGAGTTGCAAA
GTCAGTCCCGTGTTATTTGCTTCTGGAATCCATTTCAAAAACCCCAGGAGGGAAAAAAAA
ATAATAAGAACAACATTTTTATCCTTTTCTACAGAAATCAAAATGAATAGCATCCAATTA
TTTGGGGCAGAAATCACATAATGTATGATGTGACTTTGAGTGAAATAAATGCCATTTGGA
AAGGAGTTTGCAGACGCTCCCCCAAAAGCCCATCTCTGTGTGGTAAGAATGTGTGATGAG
GTTAAATTTCTGTTTCATGAAACCTGTTTGGGGATTCACAAGGGATAAGGGTCTCATATC
AGTGTAACACAGGTAGTTACAAAAATACGTTCTCGTACTGTGTAAAGATGCATAGTCATC
TAATTTGGTTGGCTTTGTACCTTAGACCTTTTTTTAAGCTTTTGCTGTACATCTGGACCC
CTCAGCACATACTGTGTTGTCCTTCCTTTTGTAAATGATTTTTTAAGTGGAATTTTGCAC
ATAATACATTGTAATACTGAATGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chr13 (26867250-26866196)
               

               
               1-1044, gnl|Hg17|chr20 (19930027-19931068)
               

               
               1-1044, gnl|Mm7|chr2 (145627261-145628441)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr13 (26867250-26866196)
               

               
               1-1044, gnl|Hg17|chr20 (19930027-19931068)
               

               
               1-1044, gnl|Mm7|chr2 (145627261-145628441)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               mga (0.480615)
               

               
               spc (0.453463)
               

               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               mga (0.480615)
               

               
               spc (0.453463)
               

               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-1044, gnl\|bosTau2\|chr13 (26867250-26866196)
	1-1044, gnl\|Hg17\|chr20 (19930027-19931068)
	1-1044, gnl\|Mm7\|chr2 (145627261-145628441)

	pro (0.512033)
	mga (0.480615)
	spc (0.453463)
	aor (0.390549)
	sin (0.349895)
	thg (0.253582)
	cbe (0.239234)
	hea (0.204499)
	sag (0.182715)
	gul (0.177588)
	rec (0.17307)
	cje (0.165235)
	ski (0.146735)
	liv (0.146284)
	csk (0.140746)
	cst (0.140036)
	ssp (0.13552)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	ebs (0.118301)
	ecc (0.115035)