Non-Coding RNA Search

Ss1.1-rspc014_m23.5

Sequence:


               
               GTTGCATCCGTTTTTAGGCCGAGGCGTCTTTTGCCTAACACCCTTATCTGCAAACGCTGA
AATTCTTGAAATGAAATCAAACGCTTAGTATATTATTATTTACCTTGTTAAATGTGTTCC
TTAAATGTGATGTTGTTTCTTTCAGTGAAAGCCCCCATTTGTATCCTTTCTTTAAACAGT
ACATTTTATCAAAGTTTACAAAACATTCTCATGACTGTCCAGGTACCTTTTGGAAAAAGT
TTGTTTTACTAGGCAAGCTTAGAGAATCTATGTCTACAGATAAAAAACAGACCCAAAGTG
CTCAGGTGAGTTTCTTTAGTTCCATAAGCAAAATACTACTGGGGAACTCCCTCTGATACT
CTCTTGTGGCAGGACTCTTTGGCCCTGATGTACTGGTAGAACCAAGAACCCCAACATTAA
CCTTGACAATGAACCTGTCCAAGTAAGTTTCTTTTGTTGACTTGACTTGATCAAGCATAA
AGATATTCCCAGTATTTGATATTCTTTTATATTTAAAGATGGAGTTGGCTGGGTGACAGG
TACCACCTTTAAAAATTCAGTAAATATCTCATACTCCAGATTAAAACACATTTTCACTCA
TTACATCCAAACTTGGGCCTACAACCTGATACCTACAATTGTGAGAGGTTAAGAAAATTC
AAATGCCTTCTTTAACTTAAGCCTCACGTTATTGGTCGTAAGAAGTCACTGCATAGTTGG
ACAATTCTGGCTGAATATGAAAAAAAATGGTTTCACCATTACTTCGTTGTATCATAATCA
TTCAGGAAAGTGACAGTTTGGTCAAACTCAAGAGTAACTATTTTTAAGATGTAAATATGT
ACTTAGTCTTGTATCTTTTATGGTAATTTTGCATACTACTAAGAATTGTTATATAAAATT
GTTTAAAATAAAAGCAATCCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCATCCGTTTTTAGGCCGAGGCGTCTTTTGCCTAACACCCTTATCTGCAAACGCTGA
AATTCTTGAAATGAAATCAAACGCTTAGTATATTATTATTTACCTTGTTAAATGTGTTCC
TTAAATGTGATGTTGTTTCTTTCAGTGAAAGCCCCCATTTGTATCCTTTCTTTAAACAGT
ACATTTTATCAAAGTTTACAAAACATTCTCATGACTGTCCAGGTACCTTTTGGAAAAAGT
TTGTTTTACTAGGCAAGCTTAGAGAATCTATGTCTACAGATAAAAAACAGACCCAAAGTG
CTCAGGTGAGTTTCTTTAGTTCCATAAGCAAAATACTACTGGGGAACTCCCTCTGATACT
CTCTTGTGGCAGGACTCTTTGGCCCTGATGTACTGGTAGAACCAAGAACCCCAACATTAA
CCTTGACAATGAACCTGTCCAAGTAAGTTTCTTTTGTTGACTTGACTTGATCAAGCATAA
AGATATTCCCAGTATTTGATATTCTTTTATATTTAAAGATGGAGTTGGCTGGGTGACAGG
TACCACCTTTAAAAATTCAGTAAATATCTCATACTCCAGATTAAAACACATTTTCACTCA
TTACATCCAAACTTGGGCCTACAACCTGATACCTACAATTGTGAGAGGTTAAGAAAATTC
AAATGCCTTCTTTAACTTAAGCCTCACGTTATTGGTCGTAAGAAGTCACTGCATAGTTGG
ACAATTCTGGCTGAATATGAAAAAAAATGGTTTCACCATTACTTCGTTGTATCATAATCA
TTCAGGAAAGTGACAGTTTGGTCAAACTCAAGAGTAACTATTTTTAAGATGTAAATATGT
ACTTAGTCTTGTATCTTTTATGGTAATTTTGCATACTACTAAGAATTGTTATATAAAATT
GTTTAAAATAAAAGCAATCCTTGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               3-924, gnl|bosTau2|chr14 (39141481-39142395)
               

               
               3-924, gnl|Hg17|chr8 (100957573-100958827)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-924, gnl|bosTau2|chr14 (39141481-39142395)
               

               
               3-924, gnl|Hg17|chr8 (100957573-100958827)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               ret (0.3862)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	3-924, gnl\|bosTau2\|chr14 (39141481-39142395)
	3-924, gnl\|Hg17\|chr8 (100957573-100958827)

	ret (0.3862)
	aor (0.195274)
	gul (0.177588)
	fat (0.147427)
	liv (0.146284)
	lyg (0.133103)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)