Non-Coding RNA Search

Ss1.1-rspc015_a17.5

Sequence:


               
               CAGCGTTAAGGAGCTTAGCCCTAGTTGCAGTGATTTTCATCTGGGGGCTAACTAGGAGTT
TACTGTTAATGGCACGAGACTTTAAAGAGGAGAGGCAAGTTTTGTGCCACAACTGGAGAA
GAAATGGTGTAAGGAAAGAAAGCCAAACGAAACACAAATATCCCTTGCGAAATATTCCAG
GTCAAAAGTGTCACCTTTCTAAGACCCACAGACACACCTTTTTCTTCTCTCCAGTGCACT
GTTTAGGAATCGTTTCTCCAGCAGCTGTGAAGTAGAAAGCATGGACTCTCTATGATATAC
CTCCGCTATTAAAAGCAAAGTACAACCCAGGTTAAAAGTACCAATTGAATAGTCTTAATA
AGTGCACCATCAGGATGACAAACCATTGAAGCTGAGCAAGCACTCTTTCTTTTCTTGAGT
TTGCCCGTCGCTTACGCCTTGAGTTAAAGGATGTGTCTCACTTTCACCTACTGTGCATTT
CCCCTGCCCTGTTTCCTAGGTCAGGTAGAGGACATTGAATGTTAGGAACTGGGAACCTAA
TTGAAGCGCATAGTTTCCATCTATGCAATTTTACTTGCTTCTGTCACTTTATGATCTGTT
CATATTTGGCATCAATTAAAGATAATTTTTAAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGTTAAGGAGCTTAGCCCTAGTTGCAGTGATTTTCATCTGGGGGCTAACTAGGAGTT
TACTGTTAATGGCACGAGACTTTAAAGAGGAGAGGCAAGTTTTGTGCCACAACTGGAGAA
GAAATGGTGTAAGGAAAGAAAGCCAAACGAAACACAAATATCCCTTGCGAAATATTCCAG
GTCAAAAGTGTCACCTTTCTAAGACCCACAGACACACCTTTTTCTTCTCTCCAGTGCACT
GTTTAGGAATCGTTTCTCCAGCAGCTGTGAAGTAGAAAGCATGGACTCTCTATGATATAC
CTCCGCTATTAAAAGCAAAGTACAACCCAGGTTAAAAGTACCAATTGAATAGTCTTAATA
AGTGCACCATCAGGATGACAAACCATTGAAGCTGAGCAAGCACTCTTTCTTTTCTTGAGT
TTGCCCGTCGCTTACGCCTTGAGTTAAAGGATGTGTCTCACTTTCACCTACTGTGCATTT
CCCCTGCCCTGTTTCCTAGGTCAGGTAGAGGACATTGAATGTTAGGAACTGGGAACCTAA
TTGAAGCGCATAGTTTCCATCTATGCAATTTTACTTGCTTCTGTCACTTTATGATCTGTT
CATATTTGGCATCAATTAAAGATAATTTTTAAGGAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-636, gnl|bosTau2|chr5 (64037459-64038076)
               

               
               2-636, gnl|Hg17|chr12 (4897032-4897671)
               

               
               2-636, gnl|Mm7|chr6 (126659895-126659273)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-636, gnl|bosTau2|chr5 (64037459-64038076)
               

               
               2-636, gnl|Hg17|chr12 (4897032-4897671)
               

               
               2-636, gnl|Mm7|chr6 (126659895-126659273)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	2-636, gnl\|bosTau2\|chr5 (64037459-64038076)
	2-636, gnl\|Hg17\|chr12 (4897032-4897671)
	2-636, gnl\|Mm7\|chr6 (126659895-126659273)

	cbe (0.478469)
	spc (0.453463)
	fbs (0.175346)
	hyp (0.142837)
	ret (0.128733)
	sug (0.127291)