Non-Coding RNA Search

Ss1.1-rspc015_d24.5

Sequence:


               
               AGGAATGGAGAACAGTGTTCCATCACCTCCTTTTTCACGTTTTTCATTTTCCTTTTTTTT
CTGTTGTTACAGATTAACACTAATTATCATGTTTGACAAATGTGTATGTATGATTTAAGC
ACTTTGTACATTTTAAAGGATGATGTGACTTAATGAGTGTTTTCCCCCTCTCCTTCCATA
TCTTACTGCATGTATTTCCACATTTTCTCTCACTCATGTTTTCTCTGTGTGTCCTTCTCA
TACCTTGACCTGCCGTGTAACCATAATGCAGCTCATTGGCAGTGATTAAAGTGAGCATGG
GTGGCAGGGTGGTCAGTCTTTGGTCATTGTGTAGAAGATGGCTGTGAATCATGAAAAAGA
TTAGAATGTTTAACAGGGTAGTGTATAGCTGGTGGTTAATTTTCTTAATTCCCAATTTAA
TAACATTAAGGGATTGCAGTCACCTTTGACCACTGAATTGGTGTTTCATCTCCTGTCATC
CTTTGATTTTCTTTGTTTGCAGATTTCACAAAGGTATAGACAGCAGGTAGTAAGTAGTTC
CCTAGGAGAGTTTATTGATGAAATCCTAGTGCAGATAACAGTTGTCTTTGAAAGATTTTT
AAAGTTTCATTCTTTCATAGATTGATTTTGAAAAATGGATGTTTAATAAAAGAAAATATA
CATTTGTTGGTAATTGATTACATCATTTAAAAAACCCTGGACCTTTCTGGAAGGGCAGTG
TATGAAAACATCAGTCCCAAGGAGAGACAGTAATACTACCTCACTCCTACACCTGCGATG
ACTGGTTATTCAGACACAGTGAAGTGTGTAAGCTCTATGTTTTATAGACATAGTGATACT
TTCAATCATGAAGGAATATTTTTGAGATTTCCTTTTCCTTCAGAATATCTTAAGAGTGCT
AAATTTTAACTGCCTTTTTGTTGAGGTGAACTGTGGGACTCTGATTTGTAATAAAATTGT
TAAGCTCTCACTGATATACTATCTTCCTGGAGGGGTGTTGTATGTCTGAGGAAGTGTGAG
AGAGTGAGAGAAAGGTTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGCGAGAGAGAGCACG
CGTGCACCCTTGTAGCATATGAAGAGTGTCTGATCCTTCATTTCTTAATGTAATTGTTAC
ATAATCATTTTAGCATATTTGGTTTCTAAATCATTGTGCTTATTTTTTTTAATCTTGAAC
TAAAAATACTTAAATTTGGTTTGTTCTGTTTTAGAAATTTTATTTTTAGGTTATATCAAT
TTCAGTTATGTTTTACAAAGAAATCTTTCCAGTTTGAAAGATGTTCAATATTCACATGTT
CTAACATTTTCTTTATTAATAAAACATCTAGATTTGGAGATAAGGAAAGCCTTGTTTTCT
CTGTGTGGTTCAGCTACCTTCCATTTGATATTATGCATTCAAATTTATGTTTATTAAAAT
TGCCATTTTGTTAGACATTTTTCATGCACGGTAGATTCAAGTTATGTCTGAAAATATCTT
TTGTGTTTTTTGATTTTGCTGACTTTGAAAGGATTAATCTGGGCAGACATTATGAAAAGG
AAAGGTTGCATTTAATATATTTTTGGGGACTTAGGACAAAAGATAACTGGTTAACCTTGA
AGTGGCTGTTGTACGGTGGTTGTGCACATGCTTCAGAGCACCGTGGAAGAGAGTGATTCT
GCTTGCAGCATGTTAGAGGAATAGATGGTGACCCTTACTGGTCACAGTTTAAAGCATGTG
TTCACTCTTCCAAAGCATTAAAGCGATTGCCATAATAGGTAAAAACATGGATTTTCATTG
GATTTTTATTTCCTTCATTTTTGAATTGTGTGCACTACCATTCCTACATCAGTTTGATAT
CAGTGTTGAAAAATTACCGGTTATTTTTGCTGTTTATAGTCTATTTGTAGATTAGAATTA
AAATGGATTCGATCCATTTTTAAAGCTGTGTGAATTTTTTCTAAACAGGAACAACTCTTT
GCAATATGAGTTTTCATTAAACCAATTAAAACTTTTATTATTAGCAGTTGAGAAGCACAT
GTTCATATAGCAATGTAAACATATATTAATGAGTATTTGGTAAATTCCAACAGGCTTTTA
CCATTAGAATTATTTTGTGTTGTACAATTAAGTTACAGTTACATCTATATAATTTTGGAT
AACATTCATTGGTTAATAACAATAAAGTGACAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATGGAGAACAGTGTTCCATCACCTCCTTTTTCACGTTTTTCATTTTCCTTTTTTTT
CTGTTGTTACAGATTAACACTAATTATCATGTTTGACAAATGTGTATGTATGATTTAAGC
ACTTTGTACATTTTAAAGGATGATGTGACTTAATGAGTGTTTTCCCCCTCTCCTTCCATA
TCTTACTGCATGTATTTCCACATTTTCTCTCACTCATGTTTTCTCTGTGTGTCCTTCTCA
TACCTTGACCTGCCGTGTAACCATAATGCAGCTCATTGGCAGTGATTAAAGTGAGCATGG
GTGGCAGGGTGGTCAGTCTTTGGTCATTGTGTAGAAGATGGCTGTGAATCATGAAAAAGA
TTAGAATGTTTAACAGGGTAGTGTATAGCTGGTGGTTAATTTTCTTAATTCCCAATTTAA
TAACATTAAGGGATTGCAGTCACCTTTGACCACTGAATTGGTGTTTCATCTCCTGTCATC
CTTTGATTTTCTTTGTTTGCAGATTTCACAAAGGTATAGACAGCAGGTAGTAAGTAGTTC
CCTAGGAGAGTTTATTGATGAAATCCTAGTGCAGATAACAGTTGTCTTTGAAAGATTTTT
AAAGTTTCATTCTTTCATAGATTGATTTTGAAAAATGGATGTTTAATAAAAGAAAATATA
CATTTGTTGGTAATTGATTACATCATTTAAAAAACCCTGGACCTTTCTGGAAGGGCAGTG
TATGAAAACATCAGTCCCAAGGAGAGACAGTAATACTACCTCACTCCTACACCTGCGATG
ACTGGTTATTCAGACACAGTGAAGTGTGTAAGCTCTATGTTTTATAGACATAGTGATACT
TTCAATCATGAAGGAATATTTTTGAGATTTCCTTTTCCTTCAGAATATCTTAAGAGTGCT
AAATTTTAACTGCCTTTTTGTTGAGGTGAACTGTGGGACTCTGATTTGTAATAAAATTGT
TAAGCTCTCACTGATATACTATCTTCCTGGAGGGGTGTTGTATGTCTGAGGAAGTGTGAG
AGAGTGAGAGAAAGGTTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGCGAGAGAGAGCACG
CGTGCACCCTTGTAGCATATGAAGAGTGTCTGATCCTTCATTTCTTAATGTAATTGTTAC
ATAATCATTTTAGCATATTTGGTTTCTAAATCATTGTGCTTATTTTTTTTAATCTTGAAC
TAAAAATACTTAAATTTGGTTTGTTCTGTTTTAGAAATTTTATTTTTAGGTTATATCAAT
TTCAGTTATGTTTTACAAAGAAATCTTTCCAGTTTGAAAGATGTTCAATATTCACATGTT
CTAACATTTTCTTTATTAATAAAACATCTAGATTTGGAGATAAGGAAAGCCTTGTTTTCT
CTGTGTGGTTCAGCTACCTTCCATTTGATATTATGCATTCAAATTTATGTTTATTAAAAT
TGCCATTTTGTTAGACATTTTTCATGCACGGTAGATTCAAGTTATGTCTGAAAATATCTT
TTGTGTTTTTTGATTTTGCTGACTTTGAAAGGATTAATCTGGGCAGACATTATGAAAAGG
AAAGGTTGCATTTAATATATTTTTGGGGACTTAGGACAAAAGATAACTGGTTAACCTTGA
AGTGGCTGTTGTACGGTGGTTGTGCACATGCTTCAGAGCACCGTGGAAGAGAGTGATTCT
GCTTGCAGCATGTTAGAGGAATAGATGGTGACCCTTACTGGTCACAGTTTAAAGCATGTG
TTCACTCTTCCAAAGCATTAAAGCGATTGCCATAATAGGTAAAAACATGGATTTTCATTG
GATTTTTATTTCCTTCATTTTTGAATTGTGTGCACTACCATTCCTACATCAGTTTGATAT
CAGTGTTGAAAAATTACCGGTTATTTTTGCTGTTTATAGTCTATTTGTAGATTAGAATTA
AAATGGATTCGATCCATTTTTAAAGCTGTGTGAATTTTTTCTAAACAGGAACAACTCTTT
GCAATATGAGTTTTCATTAAACCAATTAAAACTTTTATTATTAGCAGTTGAGAAGCACAT
GTTCATATAGCAATGTAAACATATATTAATGAGTATTTGGTAAATTCCAACAGGCTTTTA
CCATTAGAATTATTTTGTGTTGTACAATTAAGTTACAGTTACATCTATATAATTTTGGAT
AACATTCATTGGTTAATAACAATAAAGTGACAAAAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               815-1018, gnl|bosTau2|chr22 (45322176-45322377)
               

               
               815-1018, gnl|Hg17|chrX (27294507-27294301)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               815-1018, gnl|bosTau2|chr22 (45322176-45322377)
               

               
               815-1018, gnl|Hg17|chrX (27294507-27294301)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               liv (1.60913)
               

               
               kid (0.908147)
               

               
               ret (0.643666)
               

               
               tra (0.61546)
               

               
               ski (0.586941)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               tbr (0.308356)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.60913)
               

               
               kid (0.908147)
               

               
               ret (0.643666)
               

               
               tra (0.61546)
               

               
               ski (0.586941)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               tbr (0.308356)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	815-1018, gnl\|bosTau2\|chr22 (45322176-45322377)
	815-1018, gnl\|Hg17\|chrX (27294507-27294301)

	liv (1.60913)
	kid (0.908147)
	ret (0.643666)
	tra (0.61546)
	ski (0.586941)
	rec (0.519211)
	pro (0.512033)
	aor (0.390549)
	elu (0.385356)
	sug (0.381874)
	mgm (0.360685)
	tbr (0.308356)
	ssp (0.271039)
	ste (0.270416)
	cbe (0.239234)
	mgp (0.230681)
	ldo (0.194005)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	eye (0.170503)
	csp (0.161186)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	cbl (0.114797)
	spc (0.113366)