Ss1.1-rspc015_f13.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTTCGGAGAAAAATTTTACATTCCCAGGGAAAACTAAGAACTCTTCCTCACCCAGGTCCA ACTTTTGCTACATTTCTTTGTTCAGAAGGTAGTGCTTTAAGTTGTCTTCATACAAGCAAG CCAACCAAAATTTTCCTTTTGGGATCTTCTCTACTCAGTAGAGTTTAGTTTGTCTTACTT TCTTTGTCATGGAATAAACATCTAAATGCATTTAGAGTTACAGTGATGTTTTTACACAGA AATCATTATGAACAATTACAGTTCTCACTTAAACACCCTAAATCTTCTAATTGCTTTGCT CATTTGATTAAGAGATCAGGCAAGTGGGACTCCCCCACACCATCCATCTTTTCTTCTTTG TATCATTTATGTTTCAGTGATTTCTGCAGTCAGATTTTGTGCCAGGTTGAGAAGTTTCTA ATGTTTTGAAGAAATTGTAATTGAGAGTGACATTCACCTCTTCTTGCAGACATTTATTAA GCATTTATTATAGACCATGTAATTGAGAGCGAAACATTTTGGAGAATTAAAACTCATAAT TTGGATTACATCATTTATGACATAGTTATAATAATTAAGGTAATTTATGATTTAGGGTTA TTTTCCTAGACAAATTATAACAGGTGCAGTCATGTACATCAAGCCTTTCTACATAGTAGG TGGGCTTATTTGATTTTACATTAGTTACGAAGGATTTTAAGACAAACATTGACTAAGCTT CCTAATTAGCAACATGTTTAATGCTTAGGTATCTGTAAGGGTGTTTTACAGTTGCAAGAA GCTGTGCTTTCCTTCCCTGATTGAAACACTAATTTCAGGCAATGCCACTCACCTCTTAGC CCTTTAATTGAAATGATTTGGCAAAATGGCTTTTTAGGCATTCATTCTCAAATTCTAGGC CAAGACTACAATTTCACCATCCATAATAAAGGGGGGGGGGGGAGACTAATAGAAGGTTAT CAACTTGAATTTAATTTTTACTGTATGGTTATCCCAAATTTTGTGGTGTCGAAATATGCT TTTATGAAATGTTGATAGTAGTATTAGTTGCTTTAAATATTCTCACTTGGCAAAATAAAA AGTTGGCAGCCCTAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTTCGGAGAAAAATTTTACATTCCCAGGGAAAACTAAGAACTCTTCCTCACCCAGGTCCA ACTTTTGCTACATTTCTTTGTTCAGAAGGTAGTGCTTTAAGTTGTCTTCATACAAGCAAG CCAACCAAAATTTTCCTTTTGGGATCTTCTCTACTCAGTAGAGTTTAGTTTGTCTTACTT TCTTTGTCATGGAATAAACATCTAAATGCATTTAGAGTTACAGTGATGTTTTTACACAGA AATCATTATGAACAATTACAGTTCTCACTTAAACACCCTAAATCTTCTAATTGCTTTGCT CATTTGATTAAGAGATCAGGCAAGTGGGACTCCCCCACACCATCCATCTTTTCTTCTTTG TATCATTTATGTTTCAGTGATTTCTGCAGTCAGATTTTGTGCCAGGTTGAGAAGTTTCTA ATGTTTTGAAGAAATTGTAATTGAGAGTGACATTCACCTCTTCTTGCAGACATTTATTAA GCATTTATTATAGACCATGTAATTGAGAGCGAAACATTTTGGAGAATTAAAACTCATAAT TTGGATTACATCATTTATGACATAGTTATAATAATTAAGGTAATTTATGATTTAGGGTTA TTTTCCTAGACAAATTATAACAGGTGCAGTCATGTACATCAAGCCTTTCTACATAGTAGG TGGGCTTATTTGATTTTACATTAGTTACGAAGGATTTTAAGACAAACATTGACTAAGCTT CCTAATTAGCAACATGTTTAATGCTTAGGTATCTGTAAGGGTGTTTTACAGTTGCAAGAA GCTGTGCTTTCCTTCCCTGATTGAAACACTAATTTCAGGCAATGCCACTCACCTCTTAGC CCTTTAATTGAAATGATTTGGCAAAATGGCTTTTTAGGCATTCATTCTCAAATTCTAGGC CAAGACTACAATTTCACCATCCATAATAAAGGGGGGGGGGGGAGACTAATAGAAGGTTAT CAACTTGAATTTAATTTTTACTGTATGGTTATCCCAAATTTTGTGGTGTCGAAATATGCT TTTATGAAATGTTGATAGTAGTATTAGTTGCTTTAAATATTCTCACTTGGCAAAATAAAA AGTTGGCAGCCCTAAAAAAAAAAAAAAAAAAAAAAA |
Aligned organism(s): 23 entry(ies) | More info |
Aligned organism(s): 23 entry(ies) | Help | Less info |
1-227, gnl|bosTau2|chr16 (17918463-17918238) | |
1-227, gnl|dasNov1|scaffold_35130 (4469-4223) | |
1-227, gnl|dasNov1|scaffold_35130 (4469-4223) | |
1-227, gnl|echTel1|scaffold_51093 (2108-1858) | |
1-227, gnl|echTel1|scaffold_51093 (2108-1858) | |
1-227, gnl|hg17|chr1 (219377388-219377635) | |
1-227, gnl|Hg17|chr1 (219377388-219377603) | |
1-227, gnl|hg17|chr1_random (2380678-2380925) | |
1-227, gnl|mm7|chrUn_random (2277415-2277185) | |
1-227, gnl|mm7|chrUn_random (2277415-2277185) | |
1-227, gnl|Mm7|chrUn_random (2277413-2277212) | |
1-227, gnl|oryCun1|scaffold_117569 (9237-9474) | |
1-227, gnl|oryCun1|scaffold_117569 (9237-9474) | |
1-227, gnl|panTro1|chr1 (203235331-203235578) | |
1-227, gnl|panTro1|chr1 (203235331-203235578) | |
1-227, gnl|rheMac2|chr1 (147458508-147458265) | |
1-227, gnl|rheMac2|chr1 (147458508-147458265) | |
1-227, gnl|rn3|chr13 (99430707-99430471) | |
1-227, gnl|rn3|chr13 (99430707-99430471) | |
246-711, gnl|bosTau2|chr26 (169509-169050) | |
246-711, gnl|Hg17|chr10 (59719398-59719797) | |
720-1091, gnl|bosTau2|chr26 (168596-168224) | |
720-1091, gnl|Hg17|chr10 (59719833-59720191) |
Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-227, gnl|bosTau2|chr16 (17918463-17918238) | |
1-227, gnl|dasNov1|scaffold_35130 (4469-4223) | |
1-227, gnl|dasNov1|scaffold_35130 (4469-4223) | |
1-227, gnl|echTel1|scaffold_51093 (2108-1858) | |
1-227, gnl|echTel1|scaffold_51093 (2108-1858) | |
1-227, gnl|hg17|chr1 (219377388-219377635) | |
1-227, gnl|Hg17|chr1 (219377388-219377603) | |
1-227, gnl|hg17|chr1_random (2380678-2380925) | |
1-227, gnl|mm7|chrUn_random (2277415-2277185) | |
1-227, gnl|mm7|chrUn_random (2277415-2277185) | |
1-227, gnl|Mm7|chrUn_random (2277413-2277212) | |
1-227, gnl|oryCun1|scaffold_117569 (9237-9474) | |
1-227, gnl|oryCun1|scaffold_117569 (9237-9474) | |
1-227, gnl|panTro1|chr1 (203235331-203235578) | |
1-227, gnl|panTro1|chr1 (203235331-203235578) | |
1-227, gnl|rheMac2|chr1 (147458508-147458265) | |
1-227, gnl|rheMac2|chr1 (147458508-147458265) | |
1-227, gnl|rn3|chr13 (99430707-99430471) | |
1-227, gnl|rn3|chr13 (99430707-99430471) | |
246-711, gnl|bosTau2|chr26 (169509-169050) | |
246-711, gnl|Hg17|chr10 (59719398-59719797) | |
720-1091, gnl|bosTau2|chr26 (168596-168224) | |
720-1091, gnl|Hg17|chr10 (59719833-59720191) |
Expressed library(ies): 8 entry(ies) | More info |
Expressed library(ies): 8 entry(ies) | Help | Less info |
spc (0.453463) | |
fco (0.314416) | |
ski (0.146735) | |
hyp (0.142837) | |
hlv (0.139256) | |
ret (0.128733) | |
cty (0.10408) | |
nbm (0.0993246) |
Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
spc (0.453463) | |
fco (0.314416) | |
ski (0.146735) | |
hyp (0.142837) | |
hlv (0.139256) | |
ret (0.128733) | |
cty (0.10408) | |
nbm (0.0993246) |