Ss1.1-rspc015_f15.5
|
TGGACCAAAAACTCCTTTGAAGGCAGCTGCAACTTTTTCAGTTGGTTGGAACACTTTCGC
TTGCTCAGAATCATTGGAGAAACCACTGAACTGGCTGCTTTTTAATTATTATTTGACAAC
TTGCCTCCAGTCTTCTGTTAATAAGCACCGGCATATGTTTGTGAAACTAATTGACATGGA
TCATGTCATGAAGGCTAAATCCATCAGAGAATTTGACAAGCGATTCACAGCAGTCATGTT
TGGTTACCGAACAATTGACGATTATTATACTGATGCCAGTCCAAATCGTCGACTGAAATC
AGTGGGGATTCCAGTGTTGTGCCTCAATTCTGTGGATGATGTTTTTTCACCCAGTCATGC
TATTCCAATAGAAACTGCTAAGCAAAACCCTAATGTCGCTTTGGTCCTTACTTCTTATGG
AGGTCACATTGGTTTTCTGGAGGGAATCTGGCCAAGGCAGTCCACGTACATGGATCGAGT
CTTCAAGCAGTTTGTGCAGGCCATGGTTGAACACGGACATGAACTCTCTAGCATGTAGTT
CTTCTGGGGCATTTTGTCTGAACCACTGTAGGAAGGTAGCTCAGCTTAGTGCACAAACCT
TAACTACTGTATATAAAGCAAATAAGCCAGCAGGGGTTAAAGAGGTCCAGAATGACATAC
AAAAACTACTTTTGGGGGAAACAACTTTGTAGCAAGAAATAAAATATAGATTTAGATGGT
AACTTACGTAGATTTTATTTTTCCTATGCCTTACCACGTTTGACCTTAAGTAAAGTAGTA
CAAACATGGAACTGCACTTAACCAAAACTATTGTATGAAAAGACTTTAATTCCTCAGGGT
TTTAATTTAGGCTAGTATTTTTTTAGATTACTTATTTTAGGTGATATATGGTCCTTTCAT
AATTGTTAAAGAGACTTTTGTTGTTTGAGTGTAAGTTATAAGTTGGCACATTCCTAGGGG
TATTTATACCTAATGATGGCAGCCTACAAACTAAAATAAGATAAAATGCAATGTGCTGAA
TCTTTTATGTATTTTAACTTTGAAAGGCAAATGCAACAATGTTAGACTGACTTCTGTACA
TGCTCTTTTACTCTGATAATATTAAAGCTGATTTATGTTTTATAATGATTATAGTTCACA
TGCTTATTTTTAAAATAGTACATATGCATACATATATAACATATATAGTATTATATTAAA
TAAATTGTACCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGACCAAAAACTCCTTTGAAGGCAGCTGCAACTTTTTCAGTTGGTTGGAACACTTTCGC
TTGCTCAGAATCATTGGAGAAACCACTGAACTGGCTGCTTTTTAATTATTATTTGACAAC
TTGCCTCCAGTCTTCTGTTAATAAGCACCGGCATATGTTTGTGAAACTAATTGACATGGA
TCATGTCATGAAGGCTAAATCCATCAGAGAATTTGACAAGCGATTCACAGCAGTCATGTT
TGGTTACCGAACAATTGACGATTATTATACTGATGCCAGTCCAAATCGTCGACTGAAATC
AGTGGGGATTCCAGTGTTGTGCCTCAATTCTGTGGATGATGTTTTTTCACCCAGTCATGC
TATTCCAATAGAAACTGCTAAGCAAAACCCTAATGTCGCTTTGGTCCTTACTTCTTATGG
AGGTCACATTGGTTTTCTGGAGGGAATCTGGCCAAGGCAGTCCACGTACATGGATCGAGT
CTTCAAGCAGTTTGTGCAGGCCATGGTTGAACACGGACATGAACTCTCTAGCATGTAGTT
CTTCTGGGGCATTTTGTCTGAACCACTGTAGGAAGGTAGCTCAGCTTAGTGCACAAACCT
TAACTACTGTATATAAAGCAAATAAGCCAGCAGGGGTTAAAGAGGTCCAGAATGACATAC
AAAAACTACTTTTGGGGGAAACAACTTTGTAGCAAGAAATAAAATATAGATTTAGATGGT
AACTTACGTAGATTTTATTTTTCCTATGCCTTACCACGTTTGACCTTAAGTAAAGTAGTA
CAAACATGGAACTGCACTTAACCAAAACTATTGTATGAAAAGACTTTAATTCCTCAGGGT
TTTAATTTAGGCTAGTATTTTTTTAGATTACTTATTTTAGGTGATATATGGTCCTTTCAT
AATTGTTAAAGAGACTTTTGTTGTTTGAGTGTAAGTTATAAGTTGGCACATTCCTAGGGG
TATTTATACCTAATGATGGCAGCCTACAAACTAAAATAAGATAAAATGCAATGTGCTGAA
TCTTTTATGTATTTTAACTTTGAAAGGCAAATGCAACAATGTTAGACTGACTTCTGTACA
TGCTCTTTTACTCTGATAATATTAAAGCTGATTTATGTTTTATAATGATTATAGTTCACA
TGCTTATTTTTAAAATAGTACATATGCATACATATATAACATATATAGTATTATATTAAA
TAAATTGTACCA
|
|
gi|61868920|ref|XP_589534.1| |
Protein identifier
|
gi|61868920|ref|XP_589534.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-145, gnl|bosTau2|chr24 (24917416-24917560) |
|
1-145, gnl|canFam2|chr7 (69417007-69416780) |
|
1-145, gnl|danRer3|chr2 (4492020-4492201) |
|
1-145, gnl|dasNov1|scaffold_53822 (4827-4606) |
|
1-145, gnl|echTel1|scaffold_321978 (1566-1791) |
|
1-145, gnl|galGal2|chr2 (101661705-101661931) |
|
1-145, gnl|hg17|chr18 (17493098-17493326) |
|
1-145, gnl|Hg17|chr18 (17493272-17493128) |
|
1-145, gnl|loxAfr1|scaffold_20404 (26673-26899) |
|
1-145, gnl|mm7|chr18 (10858708-10858934) |
|
1-145, gnl|Mm7|chr18 (10858881-10858737) |
|
1-145, gnl|monDom2|scaffold_21 (36374973-36375182) |
|
1-145, gnl|oryCun1|scaffold_155475 (93-319) |
|
1-145, gnl|panTro1|chr17 (13393375-13393603) |
|
1-145, gnl|rheMac2|chr18 (14654550-14654780) |
|
1-145, gnl|rn3|chr18 (2033424-2033650) |
|
1-145, gnl|tetNig1|chr14 (5128257-5128445) |
|
1-145, gnl|xenTro1|scaffold_549 (404125-403944) |
| |
|
355-1197, gnl|bosTau2|chr24 (24923501-24924349) |
|
355-1197, gnl|Hg17|chr18 (17485727-17484873) |
|
355-1197, gnl|Mm7|chr18 (10851790-10850973) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-145, gnl|bosTau2|chr24 (24917416-24917560) |
|
1-145, gnl|canFam2|chr7 (69417007-69416780) |
|
1-145, gnl|danRer3|chr2 (4492020-4492201) |
|
1-145, gnl|dasNov1|scaffold_53822 (4827-4606) |
|
1-145, gnl|echTel1|scaffold_321978 (1566-1791) |
|
1-145, gnl|galGal2|chr2 (101661705-101661931) |
|
1-145, gnl|hg17|chr18 (17493098-17493326) |
|
1-145, gnl|Hg17|chr18 (17493272-17493128) |
|
1-145, gnl|loxAfr1|scaffold_20404 (26673-26899) |
|
1-145, gnl|mm7|chr18 (10858708-10858934) |
|
1-145, gnl|Mm7|chr18 (10858881-10858737) |
|
1-145, gnl|monDom2|scaffold_21 (36374973-36375182) |
|
1-145, gnl|oryCun1|scaffold_155475 (93-319) |
|
1-145, gnl|panTro1|chr17 (13393375-13393603) |
|
1-145, gnl|rheMac2|chr18 (14654550-14654780) |
|
1-145, gnl|rn3|chr18 (2033424-2033650) |
|
1-145, gnl|tetNig1|chr14 (5128257-5128445) |
|
1-145, gnl|xenTro1|scaffold_549 (404125-403944) |
| |
|
355-1197, gnl|bosTau2|chr24 (24923501-24924349) |
|
355-1197, gnl|Hg17|chr18 (17485727-17484873) |
|
355-1197, gnl|Mm7|chr18 (10851790-10850973) |
|
liv (1.02399) |
|
ret (0.514933) |
|
spc (0.340097) |
|
lun (0.300978) |
|
cbe (0.239234) |
|
sin (0.174948) |
|
fco (0.157208) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
tra (0.123092) |
|
jej (0.0989218) |
|
liv (1.02399) |
|
ret (0.514933) |
|
spc (0.340097) |
|
lun (0.300978) |
|
cbe (0.239234) |
|
sin (0.174948) |
|
fco (0.157208) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
tra (0.123092) |
|
jej (0.0989218) |
