Non-Coding RNA Search

Ss1.1-rspc016_c21.5

Sequence:


               
               AGCCATTATTTACATACATTTGAGTTTTACTTCATTTAACCAGTGAAGAAGGTATGGTTC
CAGTTTGCAGGTGGGTGAACTGGGACCCAGAGAGGTTAAGAAACCTCCCCAAGTTCTCAT
TGCTGGTAGCAGGCAGATCCAGAGTTTGAATTAAGGTCTGCCTAAATCCAAAGACTCCAT
TTTACTTCTTCCCCTTCAGGCCACCGGAATTTTTCCCGTGTTGCAGAGGCAAAGGGCCTA
GTGGTTAAGAGAGAGGGTTTGGGCTCAGGTTAGCCTGGATGCAAACTGGAGCAAGTTACA
TAATCTCTCTGAGCTTCCACTTCTGTCTGCATCTGTAAAATAAGGTTAAGGATGAGGGTT
TGGGGCTGATGAAATAGGAGAATGCATGTCTAGTACTTAGCATGTCTAGTACTTAGGCAT
ATAGAAAGCACTCAGTAAAGCTTAGCTATTACTAGTGTAGAGGAGGAGAAAGGATCACAG
CATGTGTGTTTGTTTTTGTCAATGGCCCGGGAATGGTGGTTCATCATTGTTACTACAACC
TGTTTCAGGTTGAGGCTGAAGGGGAGGAGTAGGGTGGTGATTCTGCCTGGATTGGAGAAG
GAAGCCCTGAACATAAAGACTTAAATAGGCATCCGAAGAGTTCTCCTGAGCCCTCAGCTG
AAAAATAGTTGAATACGTCTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCATTATTTACATACATTTGAGTTTTACTTCATTTAACCAGTGAAGAAGGTATGGTTC
CAGTTTGCAGGTGGGTGAACTGGGACCCAGAGAGGTTAAGAAACCTCCCCAAGTTCTCAT
TGCTGGTAGCAGGCAGATCCAGAGTTTGAATTAAGGTCTGCCTAAATCCAAAGACTCCAT
TTTACTTCTTCCCCTTCAGGCCACCGGAATTTTTCCCGTGTTGCAGAGGCAAAGGGCCTA
GTGGTTAAGAGAGAGGGTTTGGGCTCAGGTTAGCCTGGATGCAAACTGGAGCAAGTTACA
TAATCTCTCTGAGCTTCCACTTCTGTCTGCATCTGTAAAATAAGGTTAAGGATGAGGGTT
TGGGGCTGATGAAATAGGAGAATGCATGTCTAGTACTTAGCATGTCTAGTACTTAGGCAT
ATAGAAAGCACTCAGTAAAGCTTAGCTATTACTAGTGTAGAGGAGGAGAAAGGATCACAG
CATGTGTGTTTGTTTTTGTCAATGGCCCGGGAATGGTGGTTCATCATTGTTACTACAACC
TGTTTCAGGTTGAGGCTGAAGGGGAGGAGTAGGGTGGTGATTCTGCCTGGATTGGAGAAG
GAAGCCCTGAACATAAAGACTTAAATAGGCATCCGAAGAGTTCTCCTGAGCCCTCAGCTG
AAAAATAGTTGAATACGTCTTCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               179-328, - strand, RNAz p=0.985382
               

               
               559-659, - strand, RNAz p=0.963879

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-328, - strand, RNAz p=0.985382
               

               
               559-659, - strand, RNAz p=0.963879

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               163-684, gnl|bosTau2|chr23 (16711838-16712368)
               

               
               163-684, gnl|Hg17|chr6 (42532663-42531773)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-684, gnl|bosTau2|chr23 (16711838-16712368)
               

               
               163-684, gnl|Hg17|chr6 (42532663-42531773)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               spc (0.113366)

	179-328, - strand, RNAz p=0.985382
	559-659, - strand, RNAz p=0.963879

	163-684, gnl\|bosTau2\|chr23 (16711838-16712368)
	163-684, gnl\|Hg17\|chr6 (42532663-42531773)