Ss1.1-rspc016_d16.5.5
|
ATCTGTGCGTACACACACATGTGGGGAATGTTCCTGTGCGCAGATGTGTGCAGATGCCCA
CAGGGAGTGCCTGCCAAAGGCTGAAGACTCCCTTGTGCTGGTGTGATCTGCCCAGTAACA
CTCCAGAAAATGAACACCAGTGAGTCATGTTTCAAATGAACAGTTAATTGATAAATGAGG
CAGAACGGAAGTTGGCCTGGTTGCGTTCCTAACACCATAGCAGCTGAATACCAGAACAGC
TTTGTAAAGCAGTCGTTTGAGTGGCAGATGGGGAAATGTACACACACGTTACCACTCCCA
ATTCGGTAGAACTAGTACCATTGTCTTGTAGCTTTTTAAAAACTGGCTGATAAGCTTGAT
ATTCGTCTGCTTTTAAGATGCTATAGTGGAAACCATCCCCTGTTTCACCTTCATAGCCAA
GCAACATGTTGGTTTAGTCTTGTTTCTTTCCCAGGCTCTTTTTAAACAGTTTAAGGAACA
TCCAGAGACTTCCCCACCTCTTGTTATATGTACATTCTTGTTTATATTGTTAGCAACTAG
AGGCTAAGGATGTCACCAGGCTCGAAGAGCCATTCTGGGAGAGGAAAGGAAGGATGACAC
GCCCCATCATCTGGCTGGCAGTGGCTAAGCCAAACTGCCTTCACCTTCTTTCCTTGGCCT
GTAAGGTCTAGCACCAGAGGCTTCCCTAGTTTACAAGTCAGAATCATTTGTAGTCCATTT
CCTTGCCTGCATCTCCATGCTTTGTTTTGATAATCTGCATATAATGTCACTAGCCTGATT
GGCCAAATAGCTTATAGGGATCTTGACAACTTGTCTGTACTGGAGAATTGGAGCTTTATA
TCAGCCATACTACTAGGATCCTTCTGAATTGGACTATACTGACTAAAACAAGAGTATAAC
AAATAACATAATTAAATATCCAGGCCTGTATATTACTTTTTAAAGCAAATAAAGATGATT
TGTTGTCTTGCAGATAACAATTAGGTAAAATCATAATGATGTTTTATGATGTAAAAAATA
TCAAACCAATGAAAAATCAGGGACAGTATCACCCAAATATTATAATAATATGGATGAGGA
CATTTATTTTTTCCAGTGGGGGAGTGTGATGATGATAAGGCAGCTTATTAAACTTTATTT
TAAAAAATCAAAACTTTATTTTGTCTTTTTGAGGGTTGCACTCACGGCACATGGAGGTTC
CCAGGCTAGGGGTCTAATCGGAGCTGTAGCTGCTGGCCTACACCACAGCCACAGCAACGC
AGGATCCAAGTCGAGTCTCCAACCTACCACAGCTCGTGGCAATACCTGATTCTCAACCCA
CTGAGCGAGGCCAGGGATCTAACCCACAACCTCATGGTTCCTAGTCAGATTTGTTTCTGC
TGCATCACGACAGGAACTCCATAAAAAATAAAAATCAAAACTTTAGAAAGCAAACAGAAT
TAGTTGTTATTAGAAGAATATCAAGCCTTAGATTAAAGGGGGAAGAAAAAAGGACCTCTA
GGAATAGTTAAATCCCTTTCCCCATAAAAAATTCGTTTCTTGATGTGAAAAAGTATGAAA
ATTAGCAACTTCTGGCATGGAGACTATATAGTCAGATTGATAGTATACAGAATATGTAAC
TTTTTGTATGCAAAATATCAGGCAAGATGGGGAAGCAAAAAGTTACTGTTGCTCTTAACT
ACTTACAGCCTAATAATCAGTTTAAAAACTACTATAGAAAGAAAATTATGCAGTTTTTTT
TTTTAATCACCATAGCTTTCTCTTACAGTGCATTCTCTAGGAAATTTTACCTTTTTTTGG
CAGTCATAATGTACATAATATTAATGACAGAAGTTATGAGTTGAAAATTCTATCTCAGTT
TAGATTTCCCAAATAATATATTGCCATGGCTAGAGTATTTGAAAAACTAATTGAGCCTGT
GTCTAGCTATAAGACAAGCAATTATTTGTACACAAGTACTGTACTGGGGATATGTAAAGT
TAAAGAATGCCTACAATAATTCTTCTCCTGCTTAAAAGCTTCTGATTGACAGTCACTGCT
GCTCCAGGGAGTCTTCTATCTACAGCCTGAAGGAAATGAGCATAGCCTTTAAAAGTTACC
CCCTCCTGAAGATGTGATATATATTAAATGGAAATGGATGAAAATAAAATTCCGTTATCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATCTGTGCGTACACACACATGTGGGGAATGTTCCTGTGCGCAGATGTGTGCAGATGCCCA
CAGGGAGTGCCTGCCAAAGGCTGAAGACTCCCTTGTGCTGGTGTGATCTGCCCAGTAACA
CTCCAGAAAATGAACACCAGTGAGTCATGTTTCAAATGAACAGTTAATTGATAAATGAGG
CAGAACGGAAGTTGGCCTGGTTGCGTTCCTAACACCATAGCAGCTGAATACCAGAACAGC
TTTGTAAAGCAGTCGTTTGAGTGGCAGATGGGGAAATGTACACACACGTTACCACTCCCA
ATTCGGTAGAACTAGTACCATTGTCTTGTAGCTTTTTAAAAACTGGCTGATAAGCTTGAT
ATTCGTCTGCTTTTAAGATGCTATAGTGGAAACCATCCCCTGTTTCACCTTCATAGCCAA
GCAACATGTTGGTTTAGTCTTGTTTCTTTCCCAGGCTCTTTTTAAACAGTTTAAGGAACA
TCCAGAGACTTCCCCACCTCTTGTTATATGTACATTCTTGTTTATATTGTTAGCAACTAG
AGGCTAAGGATGTCACCAGGCTCGAAGAGCCATTCTGGGAGAGGAAAGGAAGGATGACAC
GCCCCATCATCTGGCTGGCAGTGGCTAAGCCAAACTGCCTTCACCTTCTTTCCTTGGCCT
GTAAGGTCTAGCACCAGAGGCTTCCCTAGTTTACAAGTCAGAATCATTTGTAGTCCATTT
CCTTGCCTGCATCTCCATGCTTTGTTTTGATAATCTGCATATAATGTCACTAGCCTGATT
GGCCAAATAGCTTATAGGGATCTTGACAACTTGTCTGTACTGGAGAATTGGAGCTTTATA
TCAGCCATACTACTAGGATCCTTCTGAATTGGACTATACTGACTAAAACAAGAGTATAAC
AAATAACATAATTAAATATCCAGGCCTGTATATTACTTTTTAAAGCAAATAAAGATGATT
TGTTGTCTTGCAGATAACAATTAGGTAAAATCATAATGATGTTTTATGATGTAAAAAATA
TCAAACCAATGAAAAATCAGGGACAGTATCACCCAAATATTATAATAATATGGATGAGGA
CATTTATTTTTTCCAGTGGGGGAGTGTGATGATGATAAGGCAGCTTATTAAACTTTATTT
TAAAAAATCAAAACTTTATTTTGTCTTTTTGAGGGTTGCACTCACGGCACATGGAGGTTC
CCAGGCTAGGGGTCTAATCGGAGCTGTAGCTGCTGGCCTACACCACAGCCACAGCAACGC
AGGATCCAAGTCGAGTCTCCAACCTACCACAGCTCGTGGCAATACCTGATTCTCAACCCA
CTGAGCGAGGCCAGGGATCTAACCCACAACCTCATGGTTCCTAGTCAGATTTGTTTCTGC
TGCATCACGACAGGAACTCCATAAAAAATAAAAATCAAAACTTTAGAAAGCAAACAGAAT
TAGTTGTTATTAGAAGAATATCAAGCCTTAGATTAAAGGGGGAAGAAAAAAGGACCTCTA
GGAATAGTTAAATCCCTTTCCCCATAAAAAATTCGTTTCTTGATGTGAAAAAGTATGAAA
ATTAGCAACTTCTGGCATGGAGACTATATAGTCAGATTGATAGTATACAGAATATGTAAC
TTTTTGTATGCAAAATATCAGGCAAGATGGGGAAGCAAAAAGTTACTGTTGCTCTTAACT
ACTTACAGCCTAATAATCAGTTTAAAAACTACTATAGAAAGAAAATTATGCAGTTTTTTT
TTTTAATCACCATAGCTTTCTCTTACAGTGCATTCTCTAGGAAATTTTACCTTTTTTTGG
CAGTCATAATGTACATAATATTAATGACAGAAGTTATGAGTTGAAAATTCTATCTCAGTT
TAGATTTCCCAAATAATATATTGCCATGGCTAGAGTATTTGAAAAACTAATTGAGCCTGT
GTCTAGCTATAAGACAAGCAATTATTTGTACACAAGTACTGTACTGGGGATATGTAAAGT
TAAAGAATGCCTACAATAATTCTTCTCCTGCTTAAAAGCTTCTGATTGACAGTCACTGCT
GCTCCAGGGAGTCTTCTATCTACAGCCTGAAGGAAATGAGCATAGCCTTTAAAAGTTACC
CCCTCCTGAAGATGTGATATATATTAAATGGAAATGGATGAAAATAAAATTCCGTTATCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
1-357, gnl|bosTau2|chr10 (9503580-9503230) |
|
1-357, gnl|Hg17|chr5 (112241951-112241489) |
| |
|
386-754, gnl|bosTau2|chr10 (9503225-9502862) |
|
386-754, gnl|Hg17|chr5 (112241484-112241121) |
| |
|
762-1157, gnl|bosTau2|chr10 (9502813-9502435) |
|
762-1157, gnl|Hg17|chr5 (112241073-112240714) |
| |
|
1410-2012, gnl|bosTau2|chr10 (9502449-9501849) |
|
1410-2012, gnl|Hg17|chr5 (112240723-112240113) |
|
1410-2012, gnl|Mm7|chr18 (34721161-34720633) |
| |
|
2028-2162, gnl|bosTau2|chr10 (9501861-9501725) |
|
2028-2162, gnl|Hg17|chr5 (112240125-112239991) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-357, gnl|bosTau2|chr10 (9503580-9503230) |
|
1-357, gnl|Hg17|chr5 (112241951-112241489) |
| |
|
386-754, gnl|bosTau2|chr10 (9503225-9502862) |
|
386-754, gnl|Hg17|chr5 (112241484-112241121) |
| |
|
762-1157, gnl|bosTau2|chr10 (9502813-9502435) |
|
762-1157, gnl|Hg17|chr5 (112241073-112240714) |
| |
|
1410-2012, gnl|bosTau2|chr10 (9502449-9501849) |
|
1410-2012, gnl|Hg17|chr5 (112240723-112240113) |
|
1410-2012, gnl|Mm7|chr18 (34721161-34720633) |
| |
|
2028-2162, gnl|bosTau2|chr10 (9501861-9501725) |
|
2028-2162, gnl|Hg17|chr5 (112240125-112239991) |
|
lyg (3.46067) |
|
sag (1.82715) |
|
rec (1.7307) |
|
ski (1.61409) |
|
mga (1.60205) |
|
pro (1.5361) |
|
spc (1.47376) |
|
mgm (1.08206) |
|
liv (1.02399) |
|
bfe (0.899146) |
|
isp (0.75188) |
|
mgp (0.692042) |
|
ste (0.676041) |
|
ret (0.643666) |
|
hea (0.613497) |
|
pgl (0.592417) |
|
fat (0.58971) |
|
lin (0.582411) |
|
gul (0.532765) |
|
cty (0.5204) |
|
thg (0.507164) |
|
tra (0.492368) |
|
cbe (0.478469) |
|
pan (0.471921) |
|
fco (0.471624) |
|
aor (0.390549) |
|
sin (0.349895) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
spl (0.286369) |
|
fce (0.271592) |
|
kid (0.259471) |
|
ova (0.258264) |
|
cbl (0.229595) |
|
tes (0.207814) |
|
col (0.195008) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
pty (0.142714) |
|
csk (0.140746) |
|
sug (0.127291) |
|
bla (0.124347) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
ldo (0.0970026) |
|
lyg (3.46067) |
|
sag (1.82715) |
|
rec (1.7307) |
|
ski (1.61409) |
|
mga (1.60205) |
|
pro (1.5361) |
|
spc (1.47376) |
|
mgm (1.08206) |
|
liv (1.02399) |
|
bfe (0.899146) |
|
isp (0.75188) |
|
mgp (0.692042) |
|
ste (0.676041) |
|
ret (0.643666) |
|
hea (0.613497) |
|
pgl (0.592417) |
|
fat (0.58971) |
|
lin (0.582411) |
|
gul (0.532765) |
|
cty (0.5204) |
|
thg (0.507164) |
|
tra (0.492368) |
|
cbe (0.478469) |
|
pan (0.471921) |
|
fco (0.471624) |
|
aor (0.390549) |
|
sin (0.349895) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
spl (0.286369) |
|
fce (0.271592) |
|
kid (0.259471) |
|
ova (0.258264) |
|
cbl (0.229595) |
|
tes (0.207814) |
|
col (0.195008) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
pty (0.142714) |
|
csk (0.140746) |
|
sug (0.127291) |
|
bla (0.124347) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
ldo (0.0970026) |
