Non-Coding RNA Search

Ss1.1-rspc016_f14.5

Sequence:


               
               TATATCTACCTATAGGATATTTTTTCCAATCCTGACCTAGCCATGGGAGAACCATTATTA
ACAGCATCTATACACTTTATTGCCCTTGTAACCAAAGATGCTAATGAGTGTGTCTGAACT
AGCTTCTCCTGGGAGGCTATATTACTGTGCTAAAATGTGTGAAACATGTTCTGACCTAAG
TGGCAGGGACAAGTTTGGTTGGCAGTGCAGTGTTGTTTGCAGCTTATCTGATAAAGGAAA
TTAAGCACATCTGCATGAATAGCATAGTTGGTTCATCTTCAGCAGTGTGAATTAATCCTG
AGGCTTAAGGTCACCAGCTCCATGTAACTCACTGAAGACTGCTGTGTCTCAGGAGTTTCT
CTTGATGATCCACCTTCTTCTGAATTACTTGAAAAGGCCAGTGTCCTTGGTCAGAACTTT
CTAATGAGAATATTTACAGTGTCCTGCTTTTATCTAGAAAAGAAGGAAAAGGGAAATATG
AAAGCAGTACATATAAAATCTGTGCATTGAATTGATATTTGCATTGGATGACTTACTTAT
TTGATTTAGCTAAATTTTGCAGGATTATACCTATTCTCAATTAATCATTTTTGGAATTCC
TGCTGTGGTGTATTGGATTAAAAATCCAATGGCAGCTGCTTGGGTCACTGCAGAGGCATG
GGTTCAATCCCTGGCCCAGTACAGTGGGTTAGGGCCTCCAGTTGTGGCTAGGATTCAATC
CCTGGGCTGGGAACTTCCATATGCTGTGGGTGTGGCCATTGAGAAAGCAAAACAGAAAAA
CCACTTTTGGAACGTGAAAGGGGAAATTTATAAAGGGAAATTTATTTTTGTGTTCTGAAG
TTTGAGGGTTTTAAGAATTAACTTTTATGTAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATCTACCTATAGGATATTTTTTCCAATCCTGACCTAGCCATGGGAGAACCATTATTA
ACAGCATCTATACACTTTATTGCCCTTGTAACCAAAGATGCTAATGAGTGTGTCTGAACT
AGCTTCTCCTGGGAGGCTATATTACTGTGCTAAAATGTGTGAAACATGTTCTGACCTAAG
TGGCAGGGACAAGTTTGGTTGGCAGTGCAGTGTTGTTTGCAGCTTATCTGATAAAGGAAA
TTAAGCACATCTGCATGAATAGCATAGTTGGTTCATCTTCAGCAGTGTGAATTAATCCTG
AGGCTTAAGGTCACCAGCTCCATGTAACTCACTGAAGACTGCTGTGTCTCAGGAGTTTCT
CTTGATGATCCACCTTCTTCTGAATTACTTGAAAAGGCCAGTGTCCTTGGTCAGAACTTT
CTAATGAGAATATTTACAGTGTCCTGCTTTTATCTAGAAAAGAAGGAAAAGGGAAATATG
AAAGCAGTACATATAAAATCTGTGCATTGAATTGATATTTGCATTGGATGACTTACTTAT
TTGATTTAGCTAAATTTTGCAGGATTATACCTATTCTCAATTAATCATTTTTGGAATTCC
TGCTGTGGTGTATTGGATTAAAAATCCAATGGCAGCTGCTTGGGTCACTGCAGAGGCATG
GGTTCAATCCCTGGCCCAGTACAGTGGGTTAGGGCCTCCAGTTGTGGCTAGGATTCAATC
CCTGGGCTGGGAACTTCCATATGCTGTGGGTGTGGCCATTGAGAAAGCAAAACAGAAAAA
CCACTTTTGGAACGTGAAAGGGGAAATTTATAAAGGGAAATTTATTTTTGTGTTCTGAAG
TTTGAGGGTTTTAAGAATTAACTTTTATGTAAAGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-514, gnl|bosTau2|chr11 (21587439-21586938)
               

               
               1-514, gnl|Hg17|chr3 (103023659-103024165)
               

               
               1-514, gnl|Mm7|chr16 (55685622-55685115)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-514, gnl|bosTau2|chr11 (21587439-21586938)
               

               
               1-514, gnl|Hg17|chr3 (103023659-103024165)
               

               
               1-514, gnl|Mm7|chr16 (55685622-55685115)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               bla (0.248694)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-514, gnl\|bosTau2\|chr11 (21587439-21586938)
	1-514, gnl\|Hg17\|chr3 (103023659-103024165)
	1-514, gnl\|Mm7\|chr16 (55685622-55685115)

	bla (0.248694)
	sto (0.179824)
	ill (0.175593)
	nca (0.136874)
	nmm (0.132802)
	ova (0.129132)
	tra (0.123092)
	spc (0.113366)