Non-Coding RNA Search

Ss1.1-rspc016_f16.5

Sequence:


               
               TTGAATAGAGAGCACTTATGGAGGCTTAAGGATTGGTATGGTCACTGTCAAAACTCTCAA
GAGAGGAACTAAGATCTATCTAGTCTTGGCTCCAGTGCTCACAGCATGAGCAGTTCTCCA
CAAGAATGTCTTTGTCTGGGTTTGTTTGACTTTTTTATGCTTCTGACGCTGGATGTCTCT
GGCTGAAGATTTGATGTGGTTCCTCCTTAAACTGTGCGTCCTGTTAATTATAGGTACTGT
ACGGGGCTCCGGGTAAGTGTCACTGGGGTAGGACCTCTATTTTAATACTGTTCCTAACAT
TTCATTTTACTAGCAAGAAATCTCTGATTTCATTTTATTCTTTGTAATTCTAGACACTAG
ATTATAGTTTAGCCTTTACTGACATTTTTAAAAAAGGGATATATTTTCTTGCACAGTCTC
AGTCCTCAGTGCTGCCTTTCATTCATAGGTACACGTTCTGGCTCAGACAAGCAAGACCAA
CCGTAGGCTCTTGGGGCGTCACTCATGTGCCCCATGGGGCTGCCGCTCTGAGCGGCAGGC
GGGGGGGCGCTGTCATGGTACAGTGTGCACAGGTACTGTTCCGACAGACTGGGATTTTCT
GTACTAAAACCTTCCTTTGTATCAAAAGTTAAACAGACTTTAGTACAATAAATAAAGGTC
AGTTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAATAGAGAGCACTTATGGAGGCTTAAGGATTGGTATGGTCACTGTCAAAACTCTCAA
GAGAGGAACTAAGATCTATCTAGTCTTGGCTCCAGTGCTCACAGCATGAGCAGTTCTCCA
CAAGAATGTCTTTGTCTGGGTTTGTTTGACTTTTTTATGCTTCTGACGCTGGATGTCTCT
GGCTGAAGATTTGATGTGGTTCCTCCTTAAACTGTGCGTCCTGTTAATTATAGGTACTGT
ACGGGGCTCCGGGTAAGTGTCACTGGGGTAGGACCTCTATTTTAATACTGTTCCTAACAT
TTCATTTTACTAGCAAGAAATCTCTGATTTCATTTTATTCTTTGTAATTCTAGACACTAG
ATTATAGTTTAGCCTTTACTGACATTTTTAAAAAAGGGATATATTTTCTTGCACAGTCTC
AGTCCTCAGTGCTGCCTTTCATTCATAGGTACACGTTCTGGCTCAGACAAGCAAGACCAA
CCGTAGGCTCTTGGGGCGTCACTCATGTGCCCCATGGGGCTGCCGCTCTGAGCGGCAGGC
GGGGGGGCGCTGTCATGGTACAGTGTGCACAGGTACTGTTCCGACAGACTGGGATTTTCT
GTACTAAAACCTTCCTTTGTATCAAAAGTTAAACAGACTTTAGTACAATAAATAAAGGTC
AGTTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-671, gnl|bosTau2|chr28 (26483462-26482784)
               

               
               2-671, gnl|Hg17|chr10 (79221260-79220555)
               

               
               2-671, gnl|Mm7|chr14 (21797334-21796613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-671, gnl|bosTau2|chr28 (26483462-26482784)
               

               
               2-671, gnl|Hg17|chr10 (79221260-79220555)
               

               
               2-671, gnl|Mm7|chr14 (21797334-21796613)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	2-671, gnl\|bosTau2\|chr28 (26483462-26482784)
	2-671, gnl\|Hg17\|chr10 (79221260-79220555)
	2-671, gnl\|Mm7\|chr14 (21797334-21796613)

	fce (0.271592)
	ece (0.229305)
	nms (0.213858)
	fcc (0.197785)
	sto (0.179824)
	ton (0.1755)
	ski (0.146735)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	eep (0.122564)
	spc (0.113366)
	nbm (0.0993246)