Ss1.1-rspc016_j2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATACTGGCTGTCGGCCTCGCGACACTTGGCTGCGGCGGGGTCGCGGAAATTTGCACCCTT GGCCGGTCCCTCTTCTTTTCCGGCGGAGAGCTTGGGATGTGGTAATGCCAGCCGGACTTC TCAGAGCCCTGGCCGGATCTCACTGCATTTTATCAAAAACGTGTCAGTGCCAAAGACTTG TTCATCGAACATTGAAACCACTTAAGGAACTTGAGACAACATGCAGCTCCCTCACCGAAA GTCAGAGCTTGGATATGTTCTTTCCTGATACAGCGGCTGGAGGTTTGAATAAGTCCCGGA TATTGGAAATGAACCAGAAAATAGCCAGTACAAGCGTCCTCTCTCCATTAAATGCTGCAC ACTTTCCAACCGGGAGCTTGTTTGGGACTCACCAGAAAGTGGCTCACAGACCAAATCTGT TAGGTTCTAAGAGGTTTGTAAAGATATTAGGGAGACATTCCTCTTCTGTATCAACGGAAA CATTTCCCAAACAAGACTTTCCAAAAATCAAGAGACCACTGAAAGCATCGAGGACCAGGC AGCCGTCCAGGACCAACCTTCCAGTTCTGTCTGTGAACGAGGACCTGATGCACTGCACTG CGTTTGCAACTGCAGATGAATATCATCTTGGAAATCTCTCTCAAGATCTGGCCGCCCATG GATATGTGGAAGTAACAAGCTTGCCTAGAGATGCAGCCAATATCTTGGTGATGGGTGTGG AAAATTCTGCAAAAGAAGGTGATCCCGGAACAATATTCTTCTTCAGGGAAGGAGCTGCTG TGTTCTGGAATGTGAAAGACAAAACTATGAAGCATGTGATGCAAGTTCTAGAAAAGCATG AAATTCAGCCCTACGAAGTGGCACTGGTACACTGGGAGAATGAAGAGCTTAACTACATAA AAACAGAGGGACAGTCAAAACTTCACAGAGGGGAAATCAGGTTAAATTCAGAGCTAGATA TAGATGACGCCATCCTAGAGAAATTTGCTTTCTCAAATGCTCTTTGCCTTTCAGTGAAAC TGGCTATCTGGGAGGCATCGCTGGATAAATTTATTGAATCTATTCAGTCGATTCCAGAGG CTTTAAAAGCTGGGAAGAAAGTGAAACTATCTCATGAAGAAGTTATGCAGAAAATGGGTG AACTCTTTGCCCTAAGACACCGTATAAACTTGAGTTCGGACTTCTTGATCACTCCTGATT TCTACTGGGACCGAGAAAATCTGGAAGAGCTTTATGATAAAACATGTCGGTTCCTCAGCA TTACTCGCAGAGTTAAGGTCATGAATGAAAAGCTTCAGCATTGCATGGAGCTAACAGATC TGATGCGGAATCACCTGACGGAGAAGAGGACTCTCCGTCTAGAATGGATGATTGTCATCC TTATCACCATAGAGGTAATGTTTGAGCTGGGACGAGTATTTTTTGTGATTAAGTGATGAC CGAAGGCGAAGTGTCATTGCAAGAGATACTCAAGTTCTACAATCAAAAATAAATGTGCAT CTGTTGAGAGATCTTTTAATAGGTATTTAATTTTTTAAATCAAGAACTTGTTAGTGATCT TTTTCAGTTCCTAAATGTACTGCTGCTTGAATAAAAATTATGAAGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATACTGGCTGTCGGCCTCGCGACACTTGGCTGCGGCGGGGTCGCGGAAATTTGCACCCTT GGCCGGTCCCTCTTCTTTTCCGGCGGAGAGCTTGGGATGTGGTAATGCCAGCCGGACTTC TCAGAGCCCTGGCCGGATCTCACTGCATTTTATCAAAAACGTGTCAGTGCCAAAGACTTG TTCATCGAACATTGAAACCACTTAAGGAACTTGAGACAACATGCAGCTCCCTCACCGAAA GTCAGAGCTTGGATATGTTCTTTCCTGATACAGCGGCTGGAGGTTTGAATAAGTCCCGGA TATTGGAAATGAACCAGAAAATAGCCAGTACAAGCGTCCTCTCTCCATTAAATGCTGCAC ACTTTCCAACCGGGAGCTTGTTTGGGACTCACCAGAAAGTGGCTCACAGACCAAATCTGT TAGGTTCTAAGAGGTTTGTAAAGATATTAGGGAGACATTCCTCTTCTGTATCAACGGAAA CATTTCCCAAACAAGACTTTCCAAAAATCAAGAGACCACTGAAAGCATCGAGGACCAGGC AGCCGTCCAGGACCAACCTTCCAGTTCTGTCTGTGAACGAGGACCTGATGCACTGCACTG CGTTTGCAACTGCAGATGAATATCATCTTGGAAATCTCTCTCAAGATCTGGCCGCCCATG GATATGTGGAAGTAACAAGCTTGCCTAGAGATGCAGCCAATATCTTGGTGATGGGTGTGG AAAATTCTGCAAAAGAAGGTGATCCCGGAACAATATTCTTCTTCAGGGAAGGAGCTGCTG TGTTCTGGAATGTGAAAGACAAAACTATGAAGCATGTGATGCAAGTTCTAGAAAAGCATG AAATTCAGCCCTACGAAGTGGCACTGGTACACTGGGAGAATGAAGAGCTTAACTACATAA AAACAGAGGGACAGTCAAAACTTCACAGAGGGGAAATCAGGTTAAATTCAGAGCTAGATA TAGATGACGCCATCCTAGAGAAATTTGCTTTCTCAAATGCTCTTTGCCTTTCAGTGAAAC TGGCTATCTGGGAGGCATCGCTGGATAAATTTATTGAATCTATTCAGTCGATTCCAGAGG CTTTAAAAGCTGGGAAGAAAGTGAAACTATCTCATGAAGAAGTTATGCAGAAAATGGGTG AACTCTTTGCCCTAAGACACCGTATAAACTTGAGTTCGGACTTCTTGATCACTCCTGATT TCTACTGGGACCGAGAAAATCTGGAAGAGCTTTATGATAAAACATGTCGGTTCCTCAGCA TTACTCGCAGAGTTAAGGTCATGAATGAAAAGCTTCAGCATTGCATGGAGCTAACAGATC TGATGCGGAATCACCTGACGGAGAAGAGGACTCTCCGTCTAGAATGGATGATTGTCATCC TTATCACCATAGAGGTAATGTTTGAGCTGGGACGAGTATTTTTTGTGATTAAGTGATGAC CGAAGGCGAAGTGTCATTGCAAGAGATACTCAAGTTCTACAATCAAAAATAAATGTGCAT CTGTTGAGAGATCTTTTAATAGGTATTTAATTTTTTAAATCAAGAACTTGTTAGTGATCT TTTTCAGTTCCTAAATGTACTGCTGCTTGAATAAAAATTATGAAGAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 357-582, gnl|bosTau2|chr9 (52819529-52819754) | |
| 357-582, gnl|Hg17|chr6 (151858784-151858556) | |
| 357-582, gnl|Mm7|chr10 (5919779-5920007) | |
| 908-1014, gnl|bosTau2|chr9 (52835895-52836001) | |
| 908-1014, gnl|canFam2|chr1 (44820370-44820508) | |
| 908-1014, gnl|danRer3|chr17 (4591248-4591383) | |
| 908-1014, gnl|dasNov1|scaffold_16878 (33572-33713) | |
| 908-1014, gnl|echTel1|scaffold_316242 (40753-40616) | |
| 908-1014, gnl|fr1|chrUn (2393922-2393793) | |
| 908-1014, gnl|galGal2|chr3 (47840448-47840586) | |
| 908-1014, gnl|hg17|chr6 (151836770-151836909) | |
| 908-1014, gnl|Hg17|chr6 (151836880-151836774) | |
| 908-1014, gnl|loxAfr1|scaffold_10958 (50728-50868) | |
| 908-1014, gnl|mm7|chr10 (5933874-5933735) | |
| 908-1014, gnl|Mm7|chr10 (5933762-5933868) | |
| 908-1014, gnl|monDom2|scaffold_0 (54541902-54541763) | |
| 908-1014, gnl|oryCun1|scaffold_201202 (50404-50265) | |
| 908-1014, gnl|panTro1|chr5 (155343325-155343464) | |
| 908-1014, gnl|rheMac2|chr4 (111661022-111660883) | |
| 908-1014, gnl|rn3|chr1 (35122963-35123097) | |
| 908-1014, gnl|tetNig1|chr10 (10999973-10999839) | |
| 1153-1286, gnl|bosTau2|chr9 (52840155-52840287) | |
| 1153-1286, gnl|Hg17|chr6 (151830651-151830520) | |
| 1153-1286, gnl|Mm7|chr10 (5939248-5939377) | |
| 1393-1608, gnl|bosTau2|chr9 (52848295-52848508) | |
| 1393-1608, gnl|Hg17|chr6 (151818518-151818014) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 357-582, gnl|bosTau2|chr9 (52819529-52819754) | |
| 357-582, gnl|Hg17|chr6 (151858784-151858556) | |
| 357-582, gnl|Mm7|chr10 (5919779-5920007) | |
| 908-1014, gnl|bosTau2|chr9 (52835895-52836001) | |
| 908-1014, gnl|canFam2|chr1 (44820370-44820508) | |
| 908-1014, gnl|danRer3|chr17 (4591248-4591383) | |
| 908-1014, gnl|dasNov1|scaffold_16878 (33572-33713) | |
| 908-1014, gnl|echTel1|scaffold_316242 (40753-40616) | |
| 908-1014, gnl|fr1|chrUn (2393922-2393793) | |
| 908-1014, gnl|galGal2|chr3 (47840448-47840586) | |
| 908-1014, gnl|hg17|chr6 (151836770-151836909) | |
| 908-1014, gnl|Hg17|chr6 (151836880-151836774) | |
| 908-1014, gnl|loxAfr1|scaffold_10958 (50728-50868) | |
| 908-1014, gnl|mm7|chr10 (5933874-5933735) | |
| 908-1014, gnl|Mm7|chr10 (5933762-5933868) | |
| 908-1014, gnl|monDom2|scaffold_0 (54541902-54541763) | |
| 908-1014, gnl|oryCun1|scaffold_201202 (50404-50265) | |
| 908-1014, gnl|panTro1|chr5 (155343325-155343464) | |
| 908-1014, gnl|rheMac2|chr4 (111661022-111660883) | |
| 908-1014, gnl|rn3|chr1 (35122963-35123097) | |
| 908-1014, gnl|tetNig1|chr10 (10999973-10999839) | |
| 1153-1286, gnl|bosTau2|chr9 (52840155-52840287) | |
| 1153-1286, gnl|Hg17|chr6 (151830651-151830520) | |
| 1153-1286, gnl|Mm7|chr10 (5939248-5939377) | |
| 1393-1608, gnl|bosTau2|chr9 (52848295-52848508) | |
| 1393-1608, gnl|Hg17|chr6 (151818518-151818014) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| rec (0.346141) | |
| liv (0.292569) | |
| fce (0.271592) | |
| bla (0.248694) | |
| spc (0.226732) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| csp (0.161186) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.346141) | |
| liv (0.292569) | |
| fce (0.271592) | |
| bla (0.248694) | |
| spc (0.226732) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| csp (0.161186) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| eje (0.0988338) |