Ss1.1-rspc017_d8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGAATGTAACAACTCTTAAAATAGATGAAAATCAATTAATATATCTACCAGACTCTA TAGGAGGGTTAATATCAATAGAAGAACTGGATTGTAGCTTCAATGAACTTGAAGCTTTGC CTTCATCTGTTGGGCAGCTTACTAATATAAGAACCTTTGCTGCAGATCATAATTACTTAC AACAGTTACCCCCGGAGATTGGAAGCTGGAAAAATATAACTGTGCTGTTTCTCCATTCCA ATAAACTTGAGACACTTCCAGAGGAAATGGGTGATATGCAAAAATTAAAAGTCATTAATC TAAGTGATAATAGATTAAAGAATTTGCCCTTTAGCTTTACAAAGCTACAGCAATTGACTG CTATGTGGCTCTCAGATAATCAGTCCAAACCCCTGATACCTCTTCAAAAAGAGACTGATT CAGAGACCCAGAAAATGGTGCTTACTAACTACATGTTCCCTCAGCAACCAAGGACTGAGG ATGTTATGTTTATATCAGATAATGAAAGTTTTAATCCTTCATTGTGGGAGGAACAGAGAA AACAGCGGGCTCAAGTGGCATTTGAATGTGATGAAGACAAAGATGAAAGGGAGGCACCTC CCAGAGAAGGAAATTTAAAGAGATATCCAACACCATACCCAGATGAGCTTAAGAATATGG TCAAAACTGTTCAAACCATTGTACACAGATTAAAAGATGAAGAGACTAATGAAGACTCAG GGAAAGATTTGAAACCACATGAAGATCAGCAAGTTGTAAATAATGAAGTGGGTGTGAAGA CATCAGAAAGTGCTACTCCAGTAAAAAGCAAAGCTGATGAAAGAGAAAAGTATATGATAG GAAACTCTATACAGAAGACCAGTGAACCTGAAGCTGAGGTCAGTCCTGGGAGTCTACCAG TAACTGCAAATATGAAGGCCTCCGAGAACTTGAAGCATATTGTTAATCATGATGATGTTT TTGAGGAATCTGAAGAGCTTTCTTCTGATGAAGAGATGAAAATGGCAGAGATGAGACCAC CATTAATTGAAACCTCTATTAACCAGCCCAAAGTGGTAGCACTTAGTAATAACAAAAAAG GTTAGATGTTAAAGGAAAGCACTAATAATAGAAATGGACTGAATAAAATTTATAAGTAAA TAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGAATGTAACAACTCTTAAAATAGATGAAAATCAATTAATATATCTACCAGACTCTA TAGGAGGGTTAATATCAATAGAAGAACTGGATTGTAGCTTCAATGAACTTGAAGCTTTGC CTTCATCTGTTGGGCAGCTTACTAATATAAGAACCTTTGCTGCAGATCATAATTACTTAC AACAGTTACCCCCGGAGATTGGAAGCTGGAAAAATATAACTGTGCTGTTTCTCCATTCCA ATAAACTTGAGACACTTCCAGAGGAAATGGGTGATATGCAAAAATTAAAAGTCATTAATC TAAGTGATAATAGATTAAAGAATTTGCCCTTTAGCTTTACAAAGCTACAGCAATTGACTG CTATGTGGCTCTCAGATAATCAGTCCAAACCCCTGATACCTCTTCAAAAAGAGACTGATT CAGAGACCCAGAAAATGGTGCTTACTAACTACATGTTCCCTCAGCAACCAAGGACTGAGG ATGTTATGTTTATATCAGATAATGAAAGTTTTAATCCTTCATTGTGGGAGGAACAGAGAA AACAGCGGGCTCAAGTGGCATTTGAATGTGATGAAGACAAAGATGAAAGGGAGGCACCTC CCAGAGAAGGAAATTTAAAGAGATATCCAACACCATACCCAGATGAGCTTAAGAATATGG TCAAAACTGTTCAAACCATTGTACACAGATTAAAAGATGAAGAGACTAATGAAGACTCAG GGAAAGATTTGAAACCACATGAAGATCAGCAAGTTGTAAATAATGAAGTGGGTGTGAAGA CATCAGAAAGTGCTACTCCAGTAAAAAGCAAAGCTGATGAAAGAGAAAAGTATATGATAG GAAACTCTATACAGAAGACCAGTGAACCTGAAGCTGAGGTCAGTCCTGGGAGTCTACCAG TAACTGCAAATATGAAGGCCTCCGAGAACTTGAAGCATATTGTTAATCATGATGATGTTT TTGAGGAATCTGAAGAGCTTTCTTCTGATGAAGAGATGAAAATGGCAGAGATGAGACCAC CATTAATTGAAACCTCTATTAACCAGCCCAAAGTGGTAGCACTTAGTAATAACAAAAAAG GTTAGATGTTAAAGGAAAGCACTAATAATAGAAATGGACTGAATAAAATTTATAAGTAAA TAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 69-187, + strand, RNAz p=0.897662 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 69-187, + strand, RNAz p=0.897662 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 69-197, gnl|bosTau2|chr20 (8426513-8426385) | |
| 69-197, gnl|canFam2|chr2 (54554521-54554653) | |
| 69-197, gnl|danRer3|chr10 (1017589-1017449) | |
| 69-197, gnl|dasNov1|scaffold_2099 (78188-78056) | |
| 69-197, gnl|echTel1|scaffold_219755 (4534-4666) | |
| 69-197, gnl|fr1|chrUn (58445098-58445230) | |
| 69-197, gnl|galGal2|chrZ (4094149-4094281) | |
| 69-197, gnl|hg17|chr5 (65357432-65357564) | |
| 69-197, gnl|Hg17|chr5 (65357433-65357561) | |
| 69-197, gnl|mm7|chr13 (100995429-100995297) | |
| 69-197, gnl|Mm7|chr13 (100995426-100995298) | |
| 69-197, gnl|monDom2|scaffold_27 (31399966-31400098) | |
| 69-197, gnl|oryCun1|scaffold_192181 (10955-11087) | |
| 69-197, gnl|panTro1|chr4 (50577241-50577109) | |
| 69-197, gnl|rheMac2|chr6 (63922950-63923082) | |
| 69-197, gnl|rn3|chr2 (34496851-34496719) | |
| 69-197, gnl|tetNig1|chrUn_random (1963620-1963488) | |
| 69-197, gnl|xenTro1|scaffold_597 (18524-18392) | |
| 483-606, gnl|bosTau2|chr20 (8410900-8410777) | |
| 483-606, gnl|canFam2|chr2 (54574111-54574299) | |
| 483-606, gnl|danRer3|chr10 (1000137-999987) | |
| 483-606, gnl|dasNov1|scaffold_2099 (58509-58317) | |
| 483-606, gnl|echTel1|scaffold_296670 (40897-40708) | |
| 483-606, gnl|fr1|chrUn (58448148-58448292) | |
| 483-606, gnl|galGal2|chrZ (4096894-4097084) | |
| 483-606, gnl|hg17|chr5 (65374619-65374806) | |
| 483-606, gnl|Hg17|chr5 (65374660-65374783) | |
| 483-606, gnl|mm7|chr13 (100983553-100983370) | |
| 483-606, gnl|Mm7|chr13 (100983513-100983390) | |
| 483-606, gnl|monDom2|scaffold_27 (31410777-31410959) | |
| 483-606, gnl|oryCun1|scaffold_147444 (3224-3406) | |
| 483-606, gnl|panTro1|chr4 (50559506-50559319) | |
| 483-606, gnl|rheMac2|chr6 (63946860-63947050) | |
| 483-606, gnl|rn3|chr2 (34488150-34487965) | |
| 483-606, gnl|tetNig1|chrUn_random (1960434-1960251) | |
| 483-606, gnl|xenTro1|scaffold_597 (11387-11200) | |
| 778-969, gnl|bosTau2|chr20 (8407915-8407724) | |
| 778-969, gnl|canFam2|chr2 (54576211-54576384) | |
| 778-969, gnl|dasNov1|scaffold_2099 (55694-55525) | |
| 778-969, gnl|echTel1|scaffold_118559 (552-400) | |
| 778-969, gnl|galGal2|chrZ (4098627-4098807) | |
| 778-969, gnl|hg17|chr5 (65377900-65378072) | |
| 778-969, gnl|Hg17|chr5 (65377935-65378126) | |
| 778-969, gnl|mm7|chr13 (100981549-100981396) | |
| 778-969, gnl|Mm7|chr13 (100981522-100981340) | |
| 778-969, gnl|monDom2|scaffold_27 (31411937-31412095) | |
| 778-969, gnl|panTro1|chr4 (50556242-50556070) | |
| 778-969, gnl|rheMac2|chr6 (63950072-63950245) | |
| 778-969, gnl|rn3|chr2 (34486285-34486127) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-197, gnl|bosTau2|chr20 (8426513-8426385) | |
| 69-197, gnl|canFam2|chr2 (54554521-54554653) | |
| 69-197, gnl|danRer3|chr10 (1017589-1017449) | |
| 69-197, gnl|dasNov1|scaffold_2099 (78188-78056) | |
| 69-197, gnl|echTel1|scaffold_219755 (4534-4666) | |
| 69-197, gnl|fr1|chrUn (58445098-58445230) | |
| 69-197, gnl|galGal2|chrZ (4094149-4094281) | |
| 69-197, gnl|hg17|chr5 (65357432-65357564) | |
| 69-197, gnl|Hg17|chr5 (65357433-65357561) | |
| 69-197, gnl|mm7|chr13 (100995429-100995297) | |
| 69-197, gnl|Mm7|chr13 (100995426-100995298) | |
| 69-197, gnl|monDom2|scaffold_27 (31399966-31400098) | |
| 69-197, gnl|oryCun1|scaffold_192181 (10955-11087) | |
| 69-197, gnl|panTro1|chr4 (50577241-50577109) | |
| 69-197, gnl|rheMac2|chr6 (63922950-63923082) | |
| 69-197, gnl|rn3|chr2 (34496851-34496719) | |
| 69-197, gnl|tetNig1|chrUn_random (1963620-1963488) | |
| 69-197, gnl|xenTro1|scaffold_597 (18524-18392) | |
| 483-606, gnl|bosTau2|chr20 (8410900-8410777) | |
| 483-606, gnl|canFam2|chr2 (54574111-54574299) | |
| 483-606, gnl|danRer3|chr10 (1000137-999987) | |
| 483-606, gnl|dasNov1|scaffold_2099 (58509-58317) | |
| 483-606, gnl|echTel1|scaffold_296670 (40897-40708) | |
| 483-606, gnl|fr1|chrUn (58448148-58448292) | |
| 483-606, gnl|galGal2|chrZ (4096894-4097084) | |
| 483-606, gnl|hg17|chr5 (65374619-65374806) | |
| 483-606, gnl|Hg17|chr5 (65374660-65374783) | |
| 483-606, gnl|mm7|chr13 (100983553-100983370) | |
| 483-606, gnl|Mm7|chr13 (100983513-100983390) | |
| 483-606, gnl|monDom2|scaffold_27 (31410777-31410959) | |
| 483-606, gnl|oryCun1|scaffold_147444 (3224-3406) | |
| 483-606, gnl|panTro1|chr4 (50559506-50559319) | |
| 483-606, gnl|rheMac2|chr6 (63946860-63947050) | |
| 483-606, gnl|rn3|chr2 (34488150-34487965) | |
| 483-606, gnl|tetNig1|chrUn_random (1960434-1960251) | |
| 483-606, gnl|xenTro1|scaffold_597 (11387-11200) | |
| 778-969, gnl|bosTau2|chr20 (8407915-8407724) | |
| 778-969, gnl|canFam2|chr2 (54576211-54576384) | |
| 778-969, gnl|dasNov1|scaffold_2099 (55694-55525) | |
| 778-969, gnl|echTel1|scaffold_118559 (552-400) | |
| 778-969, gnl|galGal2|chrZ (4098627-4098807) | |
| 778-969, gnl|hg17|chr5 (65377900-65378072) | |
| 778-969, gnl|Hg17|chr5 (65377935-65378126) | |
| 778-969, gnl|mm7|chr13 (100981549-100981396) | |
| 778-969, gnl|Mm7|chr13 (100981522-100981340) | |
| 778-969, gnl|monDom2|scaffold_27 (31411937-31412095) | |
| 778-969, gnl|panTro1|chr4 (50556242-50556070) | |
| 778-969, gnl|rheMac2|chr6 (63950072-63950245) | |
| 778-969, gnl|rn3|chr2 (34486285-34486127) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ste (0.270416) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| csk (0.140746) | |
| spc (0.113366) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.270416) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| csk (0.140746) | |
| spc (0.113366) |