Non-Coding RNA Search

Ss1.1-rspc017_f12.5

Sequence:


               
               GACTAGATTTGAGGCAAGTAAGTACTAAGACGTCCATGCAACTAGAACACACTTGCTTCT
GCAATTAAGTATACAGGGTATGTTCTAATGGAGTGAACTGGAATAGCAGTACACTAGCAA
GTGTCTGTGGAGCCTTAACATGGAAGGATTCACATAAATGCTTTGGTAATACCTATCGAG
TTCATTGGAAGACATAGCAGATAAATGTCAGGTAATCTGGAGATGACTTCAGATGGGAAA
AACCTTTCTGGACATTGGGACTCTTAATATCCTCCCTTCACCAGCTTCTGAAAAAGGAGG
GCTATTTTTAGTTTAATCATTGAAAAGTAAGACCTTTCCAGGTAGGATAAAATCAAAGCT
ATTTGCTGCAAACATTGTCTCATTTTGCTTAAAATCAAAAATCGTGATACTGTTGCATTC
TGTAAATGTCGCAGGGTTTTAAACTTACAGTTATTTTAATATTTTTGATAACTAGGAATC
TAGCATTGCCATAAAGGAAACTAAGTGCCCAATAAAGATGTGTTTGGTATAAATAAATAA
TTTTTTTGGTTTTGTTTTAAATGACAGTAAGCTACAAATCATGGTGTTAATCTTAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTAGATTTGAGGCAAGTAAGTACTAAGACGTCCATGCAACTAGAACACACTTGCTTCT
GCAATTAAGTATACAGGGTATGTTCTAATGGAGTGAACTGGAATAGCAGTACACTAGCAA
GTGTCTGTGGAGCCTTAACATGGAAGGATTCACATAAATGCTTTGGTAATACCTATCGAG
TTCATTGGAAGACATAGCAGATAAATGTCAGGTAATCTGGAGATGACTTCAGATGGGAAA
AACCTTTCTGGACATTGGGACTCTTAATATCCTCCCTTCACCAGCTTCTGAAAAAGGAGG
GCTATTTTTAGTTTAATCATTGAAAAGTAAGACCTTTCCAGGTAGGATAAAATCAAAGCT
ATTTGCTGCAAACATTGTCTCATTTTGCTTAAAATCAAAAATCGTGATACTGTTGCATTC
TGTAAATGTCGCAGGGTTTTAAACTTACAGTTATTTTAATATTTTTGATAACTAGGAATC
TAGCATTGCCATAAAGGAAACTAAGTGCCCAATAAAGATGTGTTTGGTATAAATAAATAA
TTTTTTTGGTTTTGTTTTAAATGACAGTAAGCTACAAATCATGGTGTTAATCTTAAATTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-594, gnl|bosTau2|chr17 (3285670-3285079)
               

               
               1-594, gnl|Hg17|chr4 (154616835-154617436)
               

               
               1-594, gnl|Mm7|chr3 (84274896-84274281)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-594, gnl|bosTau2|chr17 (3285670-3285079)
               

               
               1-594, gnl|Hg17|chr4 (154616835-154617436)
               

               
               1-594, gnl|Mm7|chr3 (84274896-84274281)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.350693)
               

               
               ski (0.146735)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               ski (0.146735)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-594, gnl\|bosTau2\|chr17 (3285670-3285079)
	1-594, gnl\|Hg17\|chr4 (154616835-154617436)
	1-594, gnl\|Mm7\|chr3 (84274896-84274281)