Non-Coding RNA Search

Ss1.1-rspc017_l10.5

Sequence:


               
               AACAGCTCCGATTTGGACTGTGACCCTGACCTCCCTCCATCCCTGCAGACTTCTTATGTC
TTCCTAGGTATTGTTTTAGCCCTGATAGGTGCCATTTTCCTACTGGTTTTATATCTGAAC
CGCAAAGGGATAAAGAAGTGGATGCATAACATCAGAGACGCCTGCAGGGATCACATGGAA
GGGTATCATTACAGATATGAAATCAATGCAGACCCCAGGTTAACAAACCTCAGTTCGAAT
TCGGATGTCTGAGAGCTATGCGAGGACAGAACAATGACAACTATGCATGAGATGTAGACT
TAAGCTTTATCCCATCCTAGGCTTGTTCCACCTCCACTCTCCGCTGTAGACACCACTGAC
CTTGACTGAAAGCAGTGAAGGGAACTTACTCCCTTCTTATGTAAAGTTTCTTGGTTGCTT
ATGTTACTGTAAGACGATGAGCAACTGTGCATAGGGTTTTATCCTCTTCCTTTTCTTGGA
ACTCAACACCATATGGAGGGATATTTTTCAAGTTTCAGCATGAACCTGGACTCCTGGCTG
TCTGTTTCTCTTAGTACAGTTCAAGGTGTAGCAAGTGTACTCCCACAGATAGCATTCAAC
AAAAGCTGCCTCGACTTTTTTGAGAAAAAGACTTTATTCATAAATATCCGTTTTATTCTC
ATGTACCTAAATTGTGGAGAAAATGATTGCATTCCATAAACTGCCTGCAGACCTTAGCAA
GCTCTTCAAAGTAACTCCATAGTACACAGGAGCCCCTGCATCCGAGAGCATGCTTACATG
TTACTGTTCTGCATATTACAAAAACTAACTTGCAATTTCAGACAACTTCTTTGACAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGCTCCGATTTGGACTGTGACCCTGACCTCCCTCCATCCCTGCAGACTTCTTATGTC
TTCCTAGGTATTGTTTTAGCCCTGATAGGTGCCATTTTCCTACTGGTTTTATATCTGAAC
CGCAAAGGGATAAAGAAGTGGATGCATAACATCAGAGACGCCTGCAGGGATCACATGGAA
GGGTATCATTACAGATATGAAATCAATGCAGACCCCAGGTTAACAAACCTCAGTTCGAAT
TCGGATGTCTGAGAGCTATGCGAGGACAGAACAATGACAACTATGCATGAGATGTAGACT
TAAGCTTTATCCCATCCTAGGCTTGTTCCACCTCCACTCTCCGCTGTAGACACCACTGAC
CTTGACTGAAAGCAGTGAAGGGAACTTACTCCCTTCTTATGTAAAGTTTCTTGGTTGCTT
ATGTTACTGTAAGACGATGAGCAACTGTGCATAGGGTTTTATCCTCTTCCTTTTCTTGGA
ACTCAACACCATATGGAGGGATATTTTTCAAGTTTCAGCATGAACCTGGACTCCTGGCTG
TCTGTTTCTCTTAGTACAGTTCAAGGTGTAGCAAGTGTACTCCCACAGATAGCATTCAAC
AAAAGCTGCCTCGACTTTTTTGAGAAAAAGACTTTATTCATAAATATCCGTTTTATTCTC
ATGTACCTAAATTGTGGAGAAAATGATTGCATTCCATAAACTGCCTGCAGACCTTAGCAA
GCTCTTCAAAGTAACTCCATAGTACACAGGAGCCCCTGCATCCGAGAGCATGCTTACATG
TTACTGTTCTGCATATTACAAAAACTAACTTGCAATTTCAGACAACTTCTTTGACAAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26340114|dbj|BAC33720.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26340114|dbj|BAC33720.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               702-821, - strand, RNAz p=0.795819

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               702-821, - strand, RNAz p=0.795819

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-837, gnl|bosTau2|chr9 (9479074-9479906)
               

               
               1-837, gnl|Hg17|chr6 (83132409-83133249)
               

               
               1-837, gnl|Mm7|chr9 (85943225-85944029)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-837, gnl|bosTau2|chr9 (9479074-9479906)
               

               
               1-837, gnl|Hg17|chr6 (83132409-83133249)
               

               
               1-837, gnl|Mm7|chr9 (85943225-85944029)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-837, gnl\|bosTau2\|chr9 (9479074-9479906)
	1-837, gnl\|Hg17\|chr6 (83132409-83133249)
	1-837, gnl\|Mm7\|chr9 (85943225-85944029)

	mga (0.160205)
	ski (0.146735)
	ret (0.128733)
	tra (0.123092)
	spc (0.113366)