Ss1.1-rspc017_l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGACAATGAACAAAAAGTTTATCAGCGAATACACCATGAGGAATCAGAGATGGAGACAG AAGAAGAGGTTGACATTTTAATGAGTAGTGATATTTACTCTGCAACTTTATCAACCAAAT CAATTTCTTTCACACGTGCCCAAACAGGATGGCTTTTTCGAGAAGATAAAACAGAAAGGG TAGGAAACTTTCTGGCAGACTTTTACCTGGTGAATGGACTTGTTTTAGAATCAAGAAAAA GAAGAGAACATCTCAGTGAAGAAGATATTCTTCGAAATAAGGCTATTATGGAGAGTTTGA GTAAAGGTGGAACTTTCTTTCTTATTTTTTGGCAGCCGAGTCGAAGACAGTCCCTTACCC CGCCTCCACAGAACACTATTACATGGGAAGAATATATATCTGCTGAAAATGGAAAAGCTC CTCATCTGGGTAGAGAACTGGTGTGCAAAGAAAGTAAGAAAACTTTTAAAGCCACAATAG CTATGAGCCAGGAATTTCCCTTGGGAATTGAATCATTATTGAATGTTTTGGAAGTCATAG CTCCCTTCAAGCACTTTAATAAGCTTAGAGAATTTGTTCAGATGAAACTTCCTCCAGGCT TTCCTGTAAAACTAGATATACCCGTGTTTCCTACGATCACAGCCACTGTGACTTTTCAGG AGTTTCGATATGATGAATTTGATGGCTCCATCTTTACAATACCTGATGACTACAAGGAAG ACCCAAGCCGTTTTCCTGATCTTTAACTGACACGGAAAATGATGTCATCTAAAACCAAGG AAAATAAGAGAATGCAGAGACCCCAGAAGTGAATCCAGATAGAAGGGACAAATGCTTTCA TTGAAGAAAAGGGAATCATGTTGAATCAACACATCAGTGATAATAATGAAATGGGCCTCA AATAAGAATTTCAGCAGGTTTCCTGATGTGCCATTTTCAGTCTTTTTAAAAATATACATA TTATAAGTGTAATAGTTTGACACCTTAATGACCCCAAGTCCTTCTTATGTAAAAACAGCT ATGAGTGCTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGACAATGAACAAAAAGTTTATCAGCGAATACACCATGAGGAATCAGAGATGGAGACAG AAGAAGAGGTTGACATTTTAATGAGTAGTGATATTTACTCTGCAACTTTATCAACCAAAT CAATTTCTTTCACACGTGCCCAAACAGGATGGCTTTTTCGAGAAGATAAAACAGAAAGGG TAGGAAACTTTCTGGCAGACTTTTACCTGGTGAATGGACTTGTTTTAGAATCAAGAAAAA GAAGAGAACATCTCAGTGAAGAAGATATTCTTCGAAATAAGGCTATTATGGAGAGTTTGA GTAAAGGTGGAACTTTCTTTCTTATTTTTTGGCAGCCGAGTCGAAGACAGTCCCTTACCC CGCCTCCACAGAACACTATTACATGGGAAGAATATATATCTGCTGAAAATGGAAAAGCTC CTCATCTGGGTAGAGAACTGGTGTGCAAAGAAAGTAAGAAAACTTTTAAAGCCACAATAG CTATGAGCCAGGAATTTCCCTTGGGAATTGAATCATTATTGAATGTTTTGGAAGTCATAG CTCCCTTCAAGCACTTTAATAAGCTTAGAGAATTTGTTCAGATGAAACTTCCTCCAGGCT TTCCTGTAAAACTAGATATACCCGTGTTTCCTACGATCACAGCCACTGTGACTTTTCAGG AGTTTCGATATGATGAATTTGATGGCTCCATCTTTACAATACCTGATGACTACAAGGAAG ACCCAAGCCGTTTTCCTGATCTTTAACTGACACGGAAAATGATGTCATCTAAAACCAAGG AAAATAAGAGAATGCAGAGACCCCAGAAGTGAATCCAGATAGAAGGGACAAATGCTTTCA TTGAAGAAAAGGGAATCATGTTGAATCAACACATCAGTGATAATAATGAAATGGGCCTCA AATAAGAATTTCAGCAGGTTTCCTGATGTGCCATTTTCAGTCTTTTTAAAAATATACATA TTATAAGTGTAATAGTTTGACACCTTAATGACCCCAAGTCCTTCTTATGTAAAAACAGCT ATGAGTGCTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 174-312, + strand, RNAz p=0.932289 | |
| 851-963, - strand, RNAz p=0.66905 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 174-312, + strand, RNAz p=0.932289 | |
| 851-963, - strand, RNAz p=0.66905 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 174-312, gnl|bosTau2|chr3 (50429668-50429806) | |
| 174-312, gnl|canFam2|chr6 (78513259-78513127) | |
| 174-312, gnl|danRer3|chr9 (5027643-5027511) | |
| 174-312, gnl|echTel1|scaffold_270760 (1226-1094) | |
| 174-312, gnl|fr1|chrUn (33729932-33730064) | |
| 174-312, gnl|galGal2|chr8 (29210186-29210318) | |
| 174-312, gnl|hg17|chr1 (70470091-70470223) | |
| 174-312, gnl|Hg17|chr1 (70470253-70470115) | |
| 174-312, gnl|loxAfr1|scaffold_72079 (3483-3615) | |
| 174-312, gnl|mm7|chr3 (157902927-157902795) | |
| 174-312, gnl|Mm7|chr3 (157902763-157902901) | |
| 174-312, gnl|monDom2|scaffold_40 (4539371-4539239) | |
| 174-312, gnl|oryCun1|scaffold_208876 (841-969) | |
| 174-312, gnl|panTro1|chr1 (69032902-69033034) | |
| 174-312, gnl|rheMac2|chr1 (73044088-73044220) | |
| 174-312, gnl|rn3|chr2 (256152667-256152535) | |
| 174-312, gnl|tetNig1|chr1 (12438365-12438497) | |
| 174-312, gnl|xenTro1|scaffold_3796 (15879-15747) | |
| 313-415, gnl|bosTau2|chr3 (50439360-50439461) | |
| 313-415, gnl|canFam2|chr6 (78525053-78524926) | |
| 313-415, gnl|echTel1|scaffold_287576 (982-862) | |
| 313-415, gnl|fr1|chrUn (33727337-33727466) | |
| 313-415, gnl|galGal2|chr8 (29209390-29209506) | |
| 313-415, gnl|hg17|chr1 (70454451-70454570) | |
| 313-415, gnl|Hg17|chr1 (70454570-70454469) | |
| 313-415, gnl|loxAfr1|scaffold_9424 (8061-8177) | |
| 313-415, gnl|mm7|chr3 (157907948-157907800) | |
| 313-415, gnl|Mm7|chr3 (157907800-157907902) | |
| 313-415, gnl|oryCun1|scaffold_129423 (174-334) | |
| 313-415, gnl|panTro1|chr1 (69017283-69017403) | |
| 313-415, gnl|rheMac2|chr1 (73030502-73030624) | |
| 313-415, gnl|rn3|chr2 (256157165-256156968) | |
| 313-415, gnl|tetNig1|chr1 (12436933-12437039) | |
| 313-415, gnl|xenTro1|scaffold_3796 (17472-17370) | |
| 612-1032, gnl|bosTau2|chr3 (50452037-50452452) | |
| 612-1032, gnl|Hg17|chr1 (70440555-70440136) | |
| 612-1032, gnl|Mm7|chr3 (157913902-157914256) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 174-312, gnl|bosTau2|chr3 (50429668-50429806) | |
| 174-312, gnl|canFam2|chr6 (78513259-78513127) | |
| 174-312, gnl|danRer3|chr9 (5027643-5027511) | |
| 174-312, gnl|echTel1|scaffold_270760 (1226-1094) | |
| 174-312, gnl|fr1|chrUn (33729932-33730064) | |
| 174-312, gnl|galGal2|chr8 (29210186-29210318) | |
| 174-312, gnl|hg17|chr1 (70470091-70470223) | |
| 174-312, gnl|Hg17|chr1 (70470253-70470115) | |
| 174-312, gnl|loxAfr1|scaffold_72079 (3483-3615) | |
| 174-312, gnl|mm7|chr3 (157902927-157902795) | |
| 174-312, gnl|Mm7|chr3 (157902763-157902901) | |
| 174-312, gnl|monDom2|scaffold_40 (4539371-4539239) | |
| 174-312, gnl|oryCun1|scaffold_208876 (841-969) | |
| 174-312, gnl|panTro1|chr1 (69032902-69033034) | |
| 174-312, gnl|rheMac2|chr1 (73044088-73044220) | |
| 174-312, gnl|rn3|chr2 (256152667-256152535) | |
| 174-312, gnl|tetNig1|chr1 (12438365-12438497) | |
| 174-312, gnl|xenTro1|scaffold_3796 (15879-15747) | |
| 313-415, gnl|bosTau2|chr3 (50439360-50439461) | |
| 313-415, gnl|canFam2|chr6 (78525053-78524926) | |
| 313-415, gnl|echTel1|scaffold_287576 (982-862) | |
| 313-415, gnl|fr1|chrUn (33727337-33727466) | |
| 313-415, gnl|galGal2|chr8 (29209390-29209506) | |
| 313-415, gnl|hg17|chr1 (70454451-70454570) | |
| 313-415, gnl|Hg17|chr1 (70454570-70454469) | |
| 313-415, gnl|loxAfr1|scaffold_9424 (8061-8177) | |
| 313-415, gnl|mm7|chr3 (157907948-157907800) | |
| 313-415, gnl|Mm7|chr3 (157907800-157907902) | |
| 313-415, gnl|oryCun1|scaffold_129423 (174-334) | |
| 313-415, gnl|panTro1|chr1 (69017283-69017403) | |
| 313-415, gnl|rheMac2|chr1 (73030502-73030624) | |
| 313-415, gnl|rn3|chr2 (256157165-256156968) | |
| 313-415, gnl|tetNig1|chr1 (12436933-12437039) | |
| 313-415, gnl|xenTro1|scaffold_3796 (17472-17370) | |
| 612-1032, gnl|bosTau2|chr3 (50452037-50452452) | |
| 612-1032, gnl|Hg17|chr1 (70440555-70440136) | |
| 612-1032, gnl|Mm7|chr3 (157913902-157914256) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| clu (0.119646) | |
| spc (0.113366) |