Non-Coding RNA Search

Ss1.1-rspc017_l22.5

Sequence:


               
               TTTAATACAGATAGTTTTCTTTAACTCAGTTTTCATTTCCAGATTTCATTTTTTATATCA
CTAGTTACTCTAGCACCCTATACTATGCTGTAGGAGTATCTATAAGTACATTTAAATCAT
TGAAACTTTTTTTTCAAAATTGAAACCCTTATTAAAAAGTAAGTATTCTTGGAGTTCCCA
TTGTGGGCTCAGCAATAAGGAACCCAACTAGTAATCCTAACAGTGTGGGTTCGTTTGGTA
TCTGGCCTCACTCAGTGGGTTAAGGATCTGGTGTTGCCATGTCATAGATGCAGCTCTCAG
ATCTGGCATTGCTGTGGCATAGGCTGGCAGTTCAGTCCCTGTCCTGGGAATGTCCATATG
TCACAGGTGCAGCCTAAAAAGCAAAAAGTATTCTTGTTTTGTTAAGATCAGTAGTTAAAA
GGAACTAAAATAGTTCCTTAGAGTAATCATTTCAGCCAAATGAGCTTGAAGCAACAATTT
ATTGTGTACCAAAAAGGAACTTAATTATTTAAAATCTCAAATATTAAAAAAAACTTTTAT
ATAATTCCTTATAACTATGTTTTGAAATGTTTGAATACAAAGATCAGTCTACCTCTAATT
CTAGACAAAGTATTAATATTGACTGAAGTTAATTTGCTAAGCTTTATTAAAGTTGATGGG
AATATAAGAAATTTAAAAATATTTTCTACTTGTAATTTTCTATTAATATATTTTCTAAGG
GGCAAAGGAAAAAAAAGTGACAAATCCTCTGTGACCATAAACTCCAAATAGTTTTATTTA
TTGATTTAGCTTCCAAAATGTTGAACACAAAACCTCATTTTTTTATCCACTCTTTAAGGA
CCTTATCACTTATGTTTCAAGAGATACCAAAGTAATCCACATTTGTGTAAAACTAGGTCA
TAGAAAATGAAGCAGCTAAAAAAACCATACTGTCCTATTTTGTCTGCATTAAATTTTATC
AAAATGGTTCTTATTTTTCCACAGTAAATAAGAGTAGTTTATTGTTCTTGTAAATAAAAT
TATGTAGCTGATTTTGTATGTAAAAATCTAATTTCATTAATAATATCAAAATTGTTAAAA
AATTATCTACTATGATCTTAATGGGCAGATTTAAGGATGTTATTTAAAATAAAATTACCT
TGTGGTTTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAATACAGATAGTTTTCTTTAACTCAGTTTTCATTTCCAGATTTCATTTTTTATATCA
CTAGTTACTCTAGCACCCTATACTATGCTGTAGGAGTATCTATAAGTACATTTAAATCAT
TGAAACTTTTTTTTCAAAATTGAAACCCTTATTAAAAAGTAAGTATTCTTGGAGTTCCCA
TTGTGGGCTCAGCAATAAGGAACCCAACTAGTAATCCTAACAGTGTGGGTTCGTTTGGTA
TCTGGCCTCACTCAGTGGGTTAAGGATCTGGTGTTGCCATGTCATAGATGCAGCTCTCAG
ATCTGGCATTGCTGTGGCATAGGCTGGCAGTTCAGTCCCTGTCCTGGGAATGTCCATATG
TCACAGGTGCAGCCTAAAAAGCAAAAAGTATTCTTGTTTTGTTAAGATCAGTAGTTAAAA
GGAACTAAAATAGTTCCTTAGAGTAATCATTTCAGCCAAATGAGCTTGAAGCAACAATTT
ATTGTGTACCAAAAAGGAACTTAATTATTTAAAATCTCAAATATTAAAAAAAACTTTTAT
ATAATTCCTTATAACTATGTTTTGAAATGTTTGAATACAAAGATCAGTCTACCTCTAATT
CTAGACAAAGTATTAATATTGACTGAAGTTAATTTGCTAAGCTTTATTAAAGTTGATGGG
AATATAAGAAATTTAAAAATATTTTCTACTTGTAATTTTCTATTAATATATTTTCTAAGG
GGCAAAGGAAAAAAAAGTGACAAATCCTCTGTGACCATAAACTCCAAATAGTTTTATTTA
TTGATTTAGCTTCCAAAATGTTGAACACAAAACCTCATTTTTTTATCCACTCTTTAAGGA
CCTTATCACTTATGTTTCAAGAGATACCAAAGTAATCCACATTTGTGTAAAACTAGGTCA
TAGAAAATGAAGCAGCTAAAAAAACCATACTGTCCTATTTTGTCTGCATTAAATTTTATC
AAAATGGTTCTTATTTTTCCACAGTAAATAAGAGTAGTTTATTGTTCTTGTAAATAAAAT
TATGTAGCTGATTTTGTATGTAAAAATCTAATTTCATTAATAATATCAAAATTGTTAAAA
AATTATCTACTATGATCTTAATGGGCAGATTTAAGGATGTTATTTAAAATAAAATTACCT
TGTGGTTTCTGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-170, gnl|bosTau2|chr9 (29303391-29303225)
               

               
               3-170, gnl|Hg17|chr6 (97108853-97109061)
               

               
               3-170, gnl|Mm7|chr4 (25319588-25319385)
               


               
               380-1141, gnl|bosTau2|chr9 (29303240-29302460)
               

               
               380-1141, gnl|Hg17|chr6 (97109047-97109864)
               

               
               380-1141, gnl|Mm7|chr4 (25319399-25318408)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-170, gnl|bosTau2|chr9 (29303391-29303225)
               

               
               3-170, gnl|Hg17|chr6 (97108853-97109061)
               

               
               3-170, gnl|Mm7|chr4 (25319588-25319385)
               


               
               380-1141, gnl|bosTau2|chr9 (29303240-29302460)
               

               
               380-1141, gnl|Hg17|chr6 (97109047-97109864)
               

               
               380-1141, gnl|Mm7|chr4 (25319399-25318408)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               kid (0.778412)
               

               
               ret (0.514933)
               

               
               liv (0.438853)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.778412)
               

               
               ret (0.514933)
               

               
               liv (0.438853)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	3-170, gnl\|bosTau2\|chr9 (29303391-29303225)
	3-170, gnl\|Hg17\|chr6 (97108853-97109061)
	3-170, gnl\|Mm7\|chr4 (25319588-25319385)

	380-1141, gnl\|bosTau2\|chr9 (29303240-29302460)
	380-1141, gnl\|Hg17\|chr6 (97109047-97109864)
	380-1141, gnl\|Mm7\|chr4 (25319399-25318408)

	kid (0.778412)
	ret (0.514933)
	liv (0.438853)
	vin (0.332557)
	lin (0.291206)
	pan (0.23596)
	hea (0.204499)
	mgm (0.180343)
	fhi (0.169578)
	fco (0.157208)
	bfe (0.149858)
	lnt (0.142308)
	ste (0.135208)
	tra (0.123092)
	spc (0.113366)