Non-Coding RNA Search

Ss1.1-rspc017_n2.5

Sequence:


               
               GCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC
ACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGTTTCTAAGTTCTCCCTTTTAAGCTTTCA
ACAAATTTCATTGCACTTTTCTTTCAATAAAGTTGTTGCATTCCAAAATAGTGTGATTTA
TTTTTAAGTGTCTAAGGAGGATTTTTTTTTTTAGGTCGGGTTGGGTATAAGAGATCAAGT
GTTTTCAGTCTGCTACATAATCTGTGGTAAACAGGAGGTAAGAAATGTCAGTAAAAGATG
GTTTTAATGTAGAACTGTAGTGGGTGAGTATAAATAAAACCCAGACTAGTAAGAGGTTGC
AGAATTATTCATATGTACTCTTCTATGTAGATTTACTTGTAAATACTGGATGTAGTATCT
GAGAAGGGGAAGTTTCTGCAGTACCAGCCAGGAGAAAGAATCAAAAAGAGGGTGGGAGTG
ATGGGAACCTATGGAAGAATCAGGGTTAGTATGTAAATCTATTTAAATTCACTTTGAACT
GTCTGGAAAGTCATTTGACCATTTTTGAAAGAAAGGCTCTGGCATTTGTTATTAGAAAAG
TCTCATTAGGCATTACATTAGAAAGTTTTAAGTATTAGTAGAGAAGATTATTGGCTCTTA
ACTGTTGCTGAAATTGTCAAGATTCTTTTATTATGACTGGATGAGGATTTGTTATAAATA
AAGTGATGGCCAGTGAAAAAAAAAGCTGTTGGTCTTACACAGTAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC
ACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGTTTCTAAGTTCTCCCTTTTAAGCTTTCA
ACAAATTTCATTGCACTTTTCTTTCAATAAAGTTGTTGCATTCCAAAATAGTGTGATTTA
TTTTTAAGTGTCTAAGGAGGATTTTTTTTTTTAGGTCGGGTTGGGTATAAGAGATCAAGT
GTTTTCAGTCTGCTACATAATCTGTGGTAAACAGGAGGTAAGAAATGTCAGTAAAAGATG
GTTTTAATGTAGAACTGTAGTGGGTGAGTATAAATAAAACCCAGACTAGTAAGAGGTTGC
AGAATTATTCATATGTACTCTTCTATGTAGATTTACTTGTAAATACTGGATGTAGTATCT
GAGAAGGGGAAGTTTCTGCAGTACCAGCCAGGAGAAAGAATCAAAAAGAGGGTGGGAGTG
ATGGGAACCTATGGAAGAATCAGGGTTAGTATGTAAATCTATTTAAATTCACTTTGAACT
GTCTGGAAAGTCATTTGACCATTTTTGAAAGAAAGGCTCTGGCATTTGTTATTAGAAAAG
TCTCATTAGGCATTACATTAGAAAGTTTTAAGTATTAGTAGAGAAGATTATTGGCTCTTA
ACTGTTGCTGAAATTGTCAAGATTCTTTTATTATGACTGGATGAGGATTTGTTATAAATA
AAGTGATGGCCAGTGAAAAAAAAAGCTGTTGGTCTTACACAGTAGTGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-189, gnl|bosTau2|chr17 (26090545-26090356)
               

               
               1-189, gnl|Hg17|chr12 (123921238-123921042)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-189, gnl|bosTau2|chr17 (26090545-26090356)
               

               
               1-189, gnl|Hg17|chr12 (123921238-123921042)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               isp (0.601504)
               

               
               cbe (0.478469)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               cbe (0.478469)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	1-189, gnl\|bosTau2\|chr17 (26090545-26090356)
	1-189, gnl\|Hg17\|chr12 (123921238-123921042)

	isp (0.601504)
	cbe (0.478469)
	spc (0.340097)
	fco (0.314416)
	bfe (0.299715)
	ova (0.258264)
	sug (0.254582)
	mgp (0.230681)
	hea (0.204499)
	cmu (0.186393)
	sin (0.174948)
	cut (0.169924)
	fhi (0.169578)
	mga (0.160205)
	ski (0.146735)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)