Non-Coding RNA Search

Ss1.1-rspc018_a7.5.43

Sequence:


               
               CAGCCTACACCATAGCCACCAGATCCAAGCTGTGCTTGCAGCCTGTGCCACAGCTCAGGG
CAACACTGGATCCTTAACCCATTGATCGAGGCCAGGGCTCTAACCCATGTCCTCATGGAT
ACAAGTCAAGTTCGTTACCACTGCCCCACCACGGGAACTCCCATCTACAGGATTTTTTGT
TTAAAACTGGATTGCTGGATAAGCAAATGAAAGGAAAAAAAAAAAAACCCACAGATTTCA
CAAACATATCTTCTGATCCTTGTACAGAGGAAAGAAATCATTTTAGTTTCCTTGCCCCAA
TTTTTCCACTCTCCACACTGAAGAAATATGTAATAGGTTTCCCTTTTTAAGGGGCAATCC
ATTAAAGTCTCAATTTCTCTATAATTTAAGATAGAACCTAGAGATGCCCCAAATCACCAA
AATGTGAAAGGAAGTGAAAACATTGCAAGTTGGAAATACTTTGTCCTTAATAATGCCAAA
TATCTAGATCTTTAAATTCTATCAGTATTTAACTAGAAAAGTGGCACCTCTTATTCTTTC
ATGCATCCACTTACTGACACTAATAAAACTGCTAAGTCAGTGCACAGTCACTGGCTCATT
TCATCACCGGGAAATAATCAGCTGTGAAGAGGAAATTTTTAAATACTACTATGTGTGATA
ATATAACAGTTAATGTGGGAGACAAAACCATAGTATTTTCATGTGATTCTTCATAGTTAC
GTGGCTTAGAATCACATTTGCTGTTTTCTTTCTGAAAAGCCTGTGGCAAACCCCTGCACT
GCAGTCAAGATTATACCCTGGTCAAGAACAACCAGTGTACCTCTTTGGTTTTAGGTTGAA
AATAACCAATTGTCCCTCATGCTCTTGTTCTTAGAGCCGTTATTCTTTAAGGCCCTCAAA
GTGTTTGTGATGGTCCCAATCACAAACTCTGATACTCAGTTTAGGGAGAAACCAGAGAGA
GGGTACCTCACTTCTCTCAGGGAAAATTGGGGAGTTCCCTGATGGCCTAGCAGTTAAGGA
CTCAGCGTTGTCACTGCGTCAGCTTGAGTCACTGCTGTGGCTCCGGTTTGATCGCTGGCC
TGGAAACTTGTGCATGCTGCAGGTGCAACCAAAAAGAAAAAAAAAGGAAAAAAGAAAAAA
AAAAGCACATTAGGAGTTGAACCCAGAATGGGAAATGGGCTTTGCCATTTTTAGCTCCAG
GTTTTTCCCATTAGATTTTATTTCCTCATGTTCTGGAAAGTTCACCATGACTAACCTTTT
TTGAAGTTTTAAGGGAGGCTAATTTTTTATTTGAATTGCTTGAGATGAGAGTTCTGCCAA
AGGCGCTTTTCGTCCTTGACATGGAGGTTCATTGCTTGTGGCTGTTAAAGAGCATACTGA
CCAGAATGTTCTTCATGTAGTTCACACTGCTGGTTCCTTTCATGTGAGTCTTGACATGTT
TATTTCTACCCATAATGCAATGAAAGATTTCACTAATAAAAAAAAACTTTCTATGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTACACCATAGCCACCAGATCCAAGCTGTGCTTGCAGCCTGTGCCACAGCTCAGGG
CAACACTGGATCCTTAACCCATTGATCGAGGCCAGGGCTCTAACCCATGTCCTCATGGAT
ACAAGTCAAGTTCGTTACCACTGCCCCACCACGGGAACTCCCATCTACAGGATTTTTTGT
TTAAAACTGGATTGCTGGATAAGCAAATGAAAGGAAAAAAAAAAAAACCCACAGATTTCA
CAAACATATCTTCTGATCCTTGTACAGAGGAAAGAAATCATTTTAGTTTCCTTGCCCCAA
TTTTTCCACTCTCCACACTGAAGAAATATGTAATAGGTTTCCCTTTTTAAGGGGCAATCC
ATTAAAGTCTCAATTTCTCTATAATTTAAGATAGAACCTAGAGATGCCCCAAATCACCAA
AATGTGAAAGGAAGTGAAAACATTGCAAGTTGGAAATACTTTGTCCTTAATAATGCCAAA
TATCTAGATCTTTAAATTCTATCAGTATTTAACTAGAAAAGTGGCACCTCTTATTCTTTC
ATGCATCCACTTACTGACACTAATAAAACTGCTAAGTCAGTGCACAGTCACTGGCTCATT
TCATCACCGGGAAATAATCAGCTGTGAAGAGGAAATTTTTAAATACTACTATGTGTGATA
ATATAACAGTTAATGTGGGAGACAAAACCATAGTATTTTCATGTGATTCTTCATAGTTAC
GTGGCTTAGAATCACATTTGCTGTTTTCTTTCTGAAAAGCCTGTGGCAAACCCCTGCACT
GCAGTCAAGATTATACCCTGGTCAAGAACAACCAGTGTACCTCTTTGGTTTTAGGTTGAA
AATAACCAATTGTCCCTCATGCTCTTGTTCTTAGAGCCGTTATTCTTTAAGGCCCTCAAA
GTGTTTGTGATGGTCCCAATCACAAACTCTGATACTCAGTTTAGGGAGAAACCAGAGAGA
GGGTACCTCACTTCTCTCAGGGAAAATTGGGGAGTTCCCTGATGGCCTAGCAGTTAAGGA
CTCAGCGTTGTCACTGCGTCAGCTTGAGTCACTGCTGTGGCTCCGGTTTGATCGCTGGCC
TGGAAACTTGTGCATGCTGCAGGTGCAACCAAAAAGAAAAAAAAAGGAAAAAAGAAAAAA
AAAAGCACATTAGGAGTTGAACCCAGAATGGGAAATGGGCTTTGCCATTTTTAGCTCCAG
GTTTTTCCCATTAGATTTTATTTCCTCATGTTCTGGAAAGTTCACCATGACTAACCTTTT
TTGAAGTTTTAAGGGAGGCTAATTTTTTATTTGAATTGCTTGAGATGAGAGTTCTGCCAA
AGGCGCTTTTCGTCCTTGACATGGAGGTTCATTGCTTGTGGCTGTTAAAGAGCATACTGA
CCAGAATGTTCTTCATGTAGTTCACACTGCTGGTTCCTTTCATGTGAGTCTTGACATGTT
TATTTCTACCCATAATGCAATGAAAGATTTCACTAATAAAAAAAAACTTTCTATGAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               173-996, gnl|bosTau2|chr6 (47290248-47289417)
               

               
               173-996, gnl|Hg17|chr4 (77438597-77437450)
               

               
               173-996, gnl|Mm7|chr5 (92430036-92428922)
               


               
               1153-1498, gnl|bosTau2|chr6 (47289422-47289046)
               

               
               1153-1498, gnl|Hg17|chr4 (77437455-77437069)
               

               
               1153-1498, gnl|Mm7|chr5 (92428927-92428560)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-996, gnl|bosTau2|chr6 (47290248-47289417)
               

               
               173-996, gnl|Hg17|chr4 (77438597-77437450)
               

               
               173-996, gnl|Mm7|chr5 (92430036-92428922)
               


               
               1153-1498, gnl|bosTau2|chr6 (47289422-47289046)
               

               
               1153-1498, gnl|Hg17|chr4 (77437455-77437069)
               

               
               1153-1498, gnl|Mm7|chr5 (92428927-92428560)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               cbr (2.04761)
               

               
               vin (0.665115)
               

               
               hyp (0.42851)
               

               
               spc (0.340097)
               

               
               lun (0.300978)
               

               
               lyg (0.266205)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.04761)
               

               
               vin (0.665115)
               

               
               hyp (0.42851)
               

               
               spc (0.340097)
               

               
               lun (0.300978)
               

               
               lyg (0.266205)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	173-996, gnl\|bosTau2\|chr6 (47290248-47289417)
	173-996, gnl\|Hg17\|chr4 (77438597-77437450)
	173-996, gnl\|Mm7\|chr5 (92430036-92428922)

	1153-1498, gnl\|bosTau2\|chr6 (47289422-47289046)
	1153-1498, gnl\|Hg17\|chr4 (77437455-77437069)
	1153-1498, gnl\|Mm7\|chr5 (92428927-92428560)

	cbr (2.04761)
	vin (0.665115)
	hyp (0.42851)
	spc (0.340097)
	lun (0.300978)
	lyg (0.266205)
	tes (0.207814)
	gul (0.177588)
	fbs (0.175346)
	cut (0.169924)
	nco (0.161734)
	cst (0.140036)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	clu (0.119646)
	ecc (0.115035)
	cty (0.10408)