Non-Coding RNA Search

Ss1.1-rspc018_o16.5

Sequence:


               
               AGATGAGATTTTTAGTTCAGTCTCATTTTACTGATGGGGTTTTAGATGTTTCAATTCAGG
TAACACCTGGTTAACAACAGTAGAATTACTGACTCAATGCCTGGTACTCTTTTTACAACT
GTCTTAATTGTGCCGTATGTTTCTTTAATAAGAGTTCTACTTGACATCTTTAGGAAGATA
CTTGAAAAGATATGCTATGTCTCGACATATACCATCCAAAGTATTGTTAAAAGGAGTGTA
TTAAGTGCAGCCTTAATTAGTGAAAATAATCTTCCTAATAACCCTTCTAAAACTACACTC
AGTACAAAGGGTCTTTTCCGTAAGGTGTATGTAGCTAAAATGTTAGTGTCTCAGCACTGG
AAGGAGCCCAGCCCAGCCTTATTCGAGAGCCTTAGAAAACAGTTCTTAAACAGAGGCATT
GCACTCATTCATTACCTTAAGTTTATTTTATGCTTATGGATCTCATAATTCTTTTTTAAA
AAATTGACAAATGATAGGGCCTAGCTGTGTATAAATGATCCTTGCTAAATATCTTGAGGG
TTGTTTTTTTTTTTGTAAAAAAATCCAGGAAAACCAGACAAAAAGCTTATTTTCACATTA
AAATGGAACCGTCTTTTGCAACTTCAGAATTCTATGGAAAAGCAGTTTTTATCATATTTT
GTGTCCATGCATCTTTTTCTTAACAACAGAATGGTTTACAAAAAAGAACGTAAACAATTT
GTGATCTGGCCAGGTGTACTTTTAGCTCCTGGAGGGAGAGTTGATATTATGACTTGAGTA
GAAACCATGTAGGAAAACTCGAGGGAGCAATCTGTTGCCAGTGATGTTGCTTGTGTGTGC
CATTAAACCACCTCCAGATGAGTGGGGAACACTGACATTTTAATTTTGAAATTGTATTTG
GAATTAATTGTTGCTGTGTACTAAGAACCTGACCTAAATAAAATCCTACAAAGTACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGAGATTTTTAGTTCAGTCTCATTTTACTGATGGGGTTTTAGATGTTTCAATTCAGG
TAACACCTGGTTAACAACAGTAGAATTACTGACTCAATGCCTGGTACTCTTTTTACAACT
GTCTTAATTGTGCCGTATGTTTCTTTAATAAGAGTTCTACTTGACATCTTTAGGAAGATA
CTTGAAAAGATATGCTATGTCTCGACATATACCATCCAAAGTATTGTTAAAAGGAGTGTA
TTAAGTGCAGCCTTAATTAGTGAAAATAATCTTCCTAATAACCCTTCTAAAACTACACTC
AGTACAAAGGGTCTTTTCCGTAAGGTGTATGTAGCTAAAATGTTAGTGTCTCAGCACTGG
AAGGAGCCCAGCCCAGCCTTATTCGAGAGCCTTAGAAAACAGTTCTTAAACAGAGGCATT
GCACTCATTCATTACCTTAAGTTTATTTTATGCTTATGGATCTCATAATTCTTTTTTAAA
AAATTGACAAATGATAGGGCCTAGCTGTGTATAAATGATCCTTGCTAAATATCTTGAGGG
TTGTTTTTTTTTTTGTAAAAAAATCCAGGAAAACCAGACAAAAAGCTTATTTTCACATTA
AAATGGAACCGTCTTTTGCAACTTCAGAATTCTATGGAAAAGCAGTTTTTATCATATTTT
GTGTCCATGCATCTTTTTCTTAACAACAGAATGGTTTACAAAAAAGAACGTAAACAATTT
GTGATCTGGCCAGGTGTACTTTTAGCTCCTGGAGGGAGAGTTGATATTATGACTTGAGTA
GAAACCATGTAGGAAAACTCGAGGGAGCAATCTGTTGCCAGTGATGTTGCTTGTGTGTGC
CATTAAACCACCTCCAGATGAGTGGGGAACACTGACATTTTAATTTTGAAATTGTATTTG
GAATTAATTGTTGCTGTGTACTAAGAACCTGACCTAAATAAAATCCTACAAAGTACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               831-970, gnl|bosTau2|chrX (25842700-25842559)
               

               
               831-970, gnl|Hg17|chr2 (204122276-204122402)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               831-970, gnl|bosTau2|chrX (25842700-25842559)
               

               
               831-970, gnl|Hg17|chr2 (204122276-204122402)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               cbe (2.87081)
               

               
               spc (0.453463)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (2.87081)
               

               
               spc (0.453463)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	831-970, gnl\|bosTau2\|chrX (25842700-25842559)
	831-970, gnl\|Hg17\|chr2 (204122276-204122402)

	cbe (2.87081)
	spc (0.453463)
	ret (0.3862)
	gul (0.355177)
	fco (0.314416)
	cte (0.29274)
	kid (0.259471)
	bla (0.248694)
	mgp (0.230681)
	fcc (0.197785)
	aor (0.195274)
	fhi (0.169578)
	isp (0.150376)
	ova (0.129132)
	sug (0.127291)
	ecc (0.115035)