Non-Coding RNA Search

Ss1.1-rspc020_e20.5

Sequence:


               
               ACTTTGGGGGTCTCAGTCTCCTTTTAGTCAAAGCAGGAAAATGACAAGAAAGAGATTAAA
ATTCAATATTTCCTTTAATAGTGTTAAACACTAAAATTTTAGAAAAGACAAAAAAAAGAA
AAAAATCTTTGTAAAATGGGAGAACAGAAGCAAAAGACACTACGCTCTGTCATTTTATCT
TTCTTTTGTTGAAAGACTAAAAACTGAAATGTTTTTTAGACAATCAAATGTTAGGTAAGT
GCAAAAACTTGTTTTTTCTTACTGGTGTAGAAATTAATGCCTTTTTTTATTTTTCAGTTA
TTTTATAATAACGAAATAAAAAGAACCCCCTAGCTGCCAGGCGGGTTTTGGTGTTTGAAA
TGCGGGGCAAAGCACTACATCACTGCAAATAGATACAGAGTTAGTCTGCATGTCTGTAGG
CTGTGTGATTGCGGAAAATATAAATGCTGCTAATATATTTCCTTTTTACAAAAGCATATC
TAAATAGATGATTGTTTTGATGTTAATCTTTGTAAATTATGTATTACCAATTTTAACATT
GGATGTAATTGCATAAAAAGCTTGCATCTCAATCCTTGAAAGTCTAGTATTAAATGGCAA
AAACTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTGGGGGTCTCAGTCTCCTTTTAGTCAAAGCAGGAAAATGACAAGAAAGAGATTAAA
ATTCAATATTTCCTTTAATAGTGTTAAACACTAAAATTTTAGAAAAGACAAAAAAAAGAA
AAAAATCTTTGTAAAATGGGAGAACAGAAGCAAAAGACACTACGCTCTGTCATTTTATCT
TTCTTTTGTTGAAAGACTAAAAACTGAAATGTTTTTTAGACAATCAAATGTTAGGTAAGT
GCAAAAACTTGTTTTTTCTTACTGGTGTAGAAATTAATGCCTTTTTTTATTTTTCAGTTA
TTTTATAATAACGAAATAAAAAGAACCCCCTAGCTGCCAGGCGGGTTTTGGTGTTTGAAA
TGCGGGGCAAAGCACTACATCACTGCAAATAGATACAGAGTTAGTCTGCATGTCTGTAGG
CTGTGTGATTGCGGAAAATATAAATGCTGCTAATATATTTCCTTTTTACAAAAGCATATC
TAAATAGATGATTGTTTTGATGTTAATCTTTGTAAATTATGTATTACCAATTTTAACATT
GGATGTAATTGCATAAAAAGCTTGCATCTCAATCCTTGAAAGTCTAGTATTAAATGGCAA
AAACTTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               93-200, - strand, RNAz p=0.761949
               

               
               237-356, - strand, RNAz p=0.754914

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-200, - strand, RNAz p=0.761949
               

               
               237-356, - strand, RNAz p=0.754914

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-613, gnl|bosTau2|chr3 (9616400-9615797)
               

               
               16-613, gnl|Hg17|chr1 (152118732-152118132)
               

               
               16-613, gnl|Mm7|chr3 (89192588-89193176)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-613, gnl|bosTau2|chr3 (9616400-9615797)
               

               
               16-613, gnl|Hg17|chr1 (152118732-152118132)
               

               
               16-613, gnl|Mm7|chr3 (89192588-89193176)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               jej (0.197844)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               jej (0.197844)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	93-200, - strand, RNAz p=0.761949
	237-356, - strand, RNAz p=0.754914

	16-613, gnl\|bosTau2\|chr3 (9616400-9615797)
	16-613, gnl\|Hg17\|chr1 (152118732-152118132)
	16-613, gnl\|Mm7\|chr3 (89192588-89193176)

	cbe (0.239234)
	pgl (0.236967)
	spc (0.226732)
	jej (0.197844)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	nco (0.161734)
	liv (0.146284)
	che (0.136314)
	kid (0.129735)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)