Non-Coding RNA Search

Ss1.1-rspc020_i24.5.5

Sequence:


               
               AACAAATGATTTCCCTCAGGGGAAGGGAAAAAAGGTGATTTCATGAAATACGAAGCCATT
TTACCATTTGCTTTATATATATGGATCCATGTTTCTGAGGAAAAGGACATTCTCAGGTGA
TGTATTTTTTCATGCTTTGGTGTGCATTTTAAAGAAGAATATATGTTCCTTCAGTACTGT
CCCCTGTAAGATGCCATGTGAAGAAGTTGTAGACATGTAGAAGAAAATGCTAAAGCTGCC
AAATTTCTCTTGACCCCTTAAACACAACCCATTTTTGTCATGTGGGGTGAGACATTCCTA
TGAGAGCAGTCCATTGAGAAGGTAATGAAGGAGGCGGCGGGGCTCTCCTGGAACTGGGTC
ACTGAAAGGAACTGCAAGTGCTGCAGGGAGGCGGGTGCGGTACGAGCAGCCTGGTTTGCG
GTCCCTCCGCCTGCCCTCGAGAGCCTGCTCCTAGTTTAAGCTGAGCTAAGAGACTGCACA
CAAGTCGGGTTATAGGGAACAGAGGAGAAGGGCAGATACGTGAATTTCCAAGTGTTCACG
TTCATCGGAAGATCTTCACTGAAGTGGTGCCAGAAAAGGGAACTTTCCGACTATGAGTTT
TTGAGAATACCAAACTGTGTGTTTGTCATTCTTCTTTGGAAATCATTGCCTTTGCATAGA
AAAGTGAAATTCAGGGACCAGGAATCATTTTCAGTGGGAAGGGTTTCCTAATCCGGGGTC
TGAGGTGGTTTTTACTTTATTGTGCTTTAAAAAAAAAAAAAAAATTTTTTTTTTTATCTT
TAGTTATATGTGTTTGGTTTTCTTTTGCTTTAAACTTTTAATTTGATTCTAGAAAAGCCT
GAATGTTTGTGTGTGACATTTGACTGAGGTGGTTCGGGGCCGCCTATGGCCTTTGAAGAC
AGGTGGTCGGCTTCAGCAATATCCAGTTTTTAATCCCTTGCACTTGGTGCATAGTGTTGA
GGAAGGGTGAGCTTCGTTGTCTTTGGAAAGCACAAAAGCAGAGGCAGTTTGGCTCAGGTA
GCTGCACATCCGTTGTGTATCATTTTTCCTTGGAAGCTGTCTGTCTACAAGGAATTACAG
CCAGCCCCAACCACTATTTACATTCCCGATAACCAAGAAGTAGACAGATGTTCATGGCCT
TGGCCTTAGTCAGAGGCCCTTTTCTCTTTCCTGTACCCAGGTATAGGTGAAATTGGAATT
TCCTAAGTCTATGGGAAATCAGTTCCTGTCAGAGCAGATTGCAGCAAATCGGTTCACCAA
GTCAATGCTGCATGTGTGTACTGTATTATTTTCAGAAAAAAAAAATATATAGTAGTCCGA
GTCCAAGTTATCTCGATTTTAAATTGATAGAAAAATAAGAAACTGTCAAGCAAGTTATAT
AACAACTAACAACATTGCACTTTCTGTATATGAAATCAATATTTAAATAACTTATTTTTC
TCCATTGCTGTTCTTAAACATTGTAAGTAGCTGTAATATACCAGTACCAATATGTTCTTG
CCATTGCTTCAGCCCAAGAAAGCTGTGTATTGTTTTAAAAATTGTAAAAATTATTGTGAT
TCATTTAGCAAAAGGAGGTGGACAGAAGGGTTTTCCCTATGTATCAAAACTTGTCTATAA
TTATGTCATCTATGTACCTAGAAAAAAAAAAGTAAATAAATTTCTTCCGTTGAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAATGATTTCCCTCAGGGGAAGGGAAAAAAGGTGATTTCATGAAATACGAAGCCATT
TTACCATTTGCTTTATATATATGGATCCATGTTTCTGAGGAAAAGGACATTCTCAGGTGA
TGTATTTTTTCATGCTTTGGTGTGCATTTTAAAGAAGAATATATGTTCCTTCAGTACTGT
CCCCTGTAAGATGCCATGTGAAGAAGTTGTAGACATGTAGAAGAAAATGCTAAAGCTGCC
AAATTTCTCTTGACCCCTTAAACACAACCCATTTTTGTCATGTGGGGTGAGACATTCCTA
TGAGAGCAGTCCATTGAGAAGGTAATGAAGGAGGCGGCGGGGCTCTCCTGGAACTGGGTC
ACTGAAAGGAACTGCAAGTGCTGCAGGGAGGCGGGTGCGGTACGAGCAGCCTGGTTTGCG
GTCCCTCCGCCTGCCCTCGAGAGCCTGCTCCTAGTTTAAGCTGAGCTAAGAGACTGCACA
CAAGTCGGGTTATAGGGAACAGAGGAGAAGGGCAGATACGTGAATTTCCAAGTGTTCACG
TTCATCGGAAGATCTTCACTGAAGTGGTGCCAGAAAAGGGAACTTTCCGACTATGAGTTT
TTGAGAATACCAAACTGTGTGTTTGTCATTCTTCTTTGGAAATCATTGCCTTTGCATAGA
AAAGTGAAATTCAGGGACCAGGAATCATTTTCAGTGGGAAGGGTTTCCTAATCCGGGGTC
TGAGGTGGTTTTTACTTTATTGTGCTTTAAAAAAAAAAAAAAAATTTTTTTTTTTATCTT
TAGTTATATGTGTTTGGTTTTCTTTTGCTTTAAACTTTTAATTTGATTCTAGAAAAGCCT
GAATGTTTGTGTGTGACATTTGACTGAGGTGGTTCGGGGCCGCCTATGGCCTTTGAAGAC
AGGTGGTCGGCTTCAGCAATATCCAGTTTTTAATCCCTTGCACTTGGTGCATAGTGTTGA
GGAAGGGTGAGCTTCGTTGTCTTTGGAAAGCACAAAAGCAGAGGCAGTTTGGCTCAGGTA
GCTGCACATCCGTTGTGTATCATTTTTCCTTGGAAGCTGTCTGTCTACAAGGAATTACAG
CCAGCCCCAACCACTATTTACATTCCCGATAACCAAGAAGTAGACAGATGTTCATGGCCT
TGGCCTTAGTCAGAGGCCCTTTTCTCTTTCCTGTACCCAGGTATAGGTGAAATTGGAATT
TCCTAAGTCTATGGGAAATCAGTTCCTGTCAGAGCAGATTGCAGCAAATCGGTTCACCAA
GTCAATGCTGCATGTGTGTACTGTATTATTTTCAGAAAAAAAAAATATATAGTAGTCCGA
GTCCAAGTTATCTCGATTTTAAATTGATAGAAAAATAAGAAACTGTCAAGCAAGTTATAT
AACAACTAACAACATTGCACTTTCTGTATATGAAATCAATATTTAAATAACTTATTTTTC
TCCATTGCTGTTCTTAAACATTGTAAGTAGCTGTAATATACCAGTACCAATATGTTCTTG
CCATTGCTTCAGCCCAAGAAAGCTGTGTATTGTTTTAAAAATTGTAAAAATTATTGTGAT
TCATTTAGCAAAAGGAGGTGGACAGAAGGGTTTTCCCTATGTATCAAAACTTGTCTATAA
TTATGTCATCTATGTACCTAGAAAAAAAAAAGTAAATAAATTTCTTCCGTTGAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1469-1689, gnl|bosTau2|chr13 (20577095-20576882)
               

               
               1469-1689, gnl|Mm7|chr10 (8422180-8421977)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1469-1689, gnl|bosTau2|chr13 (20577095-20576882)
               

               
               1469-1689, gnl|Mm7|chr10 (8422180-8421977)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               ski (1.17388)
               

               
               mga (0.96123)
               

               
               spc (0.906927)
               

               
               aor (0.585823)
               

               
               rec (0.519211)
               

               
               fco (0.471624)
               

               
               csk (0.422238)
               

               
               gul (0.355177)
               

               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (1.17388)
               

               
               mga (0.96123)
               

               
               spc (0.906927)
               

               
               aor (0.585823)
               

               
               rec (0.519211)
               

               
               fco (0.471624)
               

               
               csk (0.422238)
               

               
               gul (0.355177)
               

               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1469-1689, gnl\|bosTau2\|chr13 (20577095-20576882)
	1469-1689, gnl\|Mm7\|chr10 (8422180-8421977)

	ski (1.17388)
	mga (0.96123)
	spc (0.906927)
	aor (0.585823)
	rec (0.519211)
	fco (0.471624)
	csk (0.422238)
	gul (0.355177)
	isp (0.300752)
	fce (0.271592)
	ret (0.257467)
	mgp (0.230681)
	col (0.195008)
	sag (0.182715)
	ton (0.1755)
	fhi (0.169578)
	cki (0.165235)
	liv (0.146284)
	pty (0.142714)
	ssp (0.13552)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)