Non-Coding RNA Search

Ss1.1-rspc021_b6.5

Sequence:


               
               TACCCCAGCCTCTTGAGCTGAAGTAATGTGTGGGCCGCATGCATAAAGTAAGTAAGGTGC
CATGAAGAAGTGTTGATTGCCCAATTGACGTTTTCACATTTTCATTGTGAATTATGTAAA
ATTGTTAAGAGATATACCCTCTAAAAAAAGAATTTTAGAATGGTGTTGAAGAAATTAATG
AATTCAGAGTGCTTTCTGTGTACATTCTCTTCAATACTGAAAACTTGTTCTTGGTTCTTA
AAAACATTCTGTATTCACTGCAGCTCTTCCATAGGGCAGTTGTTGCTTCTTAATTCAGTT
CTGTATGTGTTCAACATTTTTGAATACATTAAAGAAGTAACCAACTGAATGAAAAAGCAT
GGTATTTGAACTTTAAATCAAAGTAAAAATACAAAGCCTGTTTTAGTTTAGTACTAAATT
CTAGCAGAAAGATGCTCATTAGTACAGTCCCTTGAGTTATATAACAAGGTTTTTAAATAA
ATGTTTTTGTCATCGCCTTCAAAAATATTTATATTGTCACTCATTTACTTTAAAAGATTT
TTCTAACTGTTCCCCTTTGCACTTATACCACCAACAGGAAAGCCTTCAAAATGTTAAAGC
AAAGTGATGTATTTGTTTGTAAAATATTGTGTGTTGTAGAAAAATACTGATTTTAAGTCT
TTTCCATATTAACATACTTTAACAGAGTATCTAGTGAATCTTTTAAATGAAAAAAGTTAT
AAGGTATAGTTCTTTAAAAGTACAGTATTAGATATGCACAAGGGAAATAATTTTCTTCAG
ACATGTTTGAATGACTGCTGTACTACAATATTTGGATTGTCATTCTTGAAAAACTTTTTT
TGTTGTTGTTTTCTTCTCAAAAGAATAGTTACACATTAGCTTTCCAAAATGCTATATAAC
TTTTGTCATTCTGTGAAGGAGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCCCAGCCTCTTGAGCTGAAGTAATGTGTGGGCCGCATGCATAAAGTAAGTAAGGTGC
CATGAAGAAGTGTTGATTGCCCAATTGACGTTTTCACATTTTCATTGTGAATTATGTAAA
ATTGTTAAGAGATATACCCTCTAAAAAAAGAATTTTAGAATGGTGTTGAAGAAATTAATG
AATTCAGAGTGCTTTCTGTGTACATTCTCTTCAATACTGAAAACTTGTTCTTGGTTCTTA
AAAACATTCTGTATTCACTGCAGCTCTTCCATAGGGCAGTTGTTGCTTCTTAATTCAGTT
CTGTATGTGTTCAACATTTTTGAATACATTAAAGAAGTAACCAACTGAATGAAAAAGCAT
GGTATTTGAACTTTAAATCAAAGTAAAAATACAAAGCCTGTTTTAGTTTAGTACTAAATT
CTAGCAGAAAGATGCTCATTAGTACAGTCCCTTGAGTTATATAACAAGGTTTTTAAATAA
ATGTTTTTGTCATCGCCTTCAAAAATATTTATATTGTCACTCATTTACTTTAAAAGATTT
TTCTAACTGTTCCCCTTTGCACTTATACCACCAACAGGAAAGCCTTCAAAATGTTAAAGC
AAAGTGATGTATTTGTTTGTAAAATATTGTGTGTTGTAGAAAAATACTGATTTTAAGTCT
TTTCCATATTAACATACTTTAACAGAGTATCTAGTGAATCTTTTAAATGAAAAAAGTTAT
AAGGTATAGTTCTTTAAAAGTACAGTATTAGATATGCACAAGGGAAATAATTTTCTTCAG
ACATGTTTGAATGACTGCTGTACTACAATATTTGGATTGTCATTCTTGAAAAACTTTTTT
TGTTGTTGTTTTCTTCTCAAAAGAATAGTTACACATTAGCTTTCCAAAATGCTATATAAC
TTTTGTCATTCTGTGAAGGAGCTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               231-384, - strand, RNAz p=0.957517
               

               
               261-361, - strand, RNAz p=0.601715

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-384, - strand, RNAz p=0.957517
               

               
               261-361, - strand, RNAz p=0.601715

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-924, gnl|bosTau2|chr2 (62288265-62287329)
               

               
               1-924, gnl|canFam2|chr37 (18977411-18978409)
               

               
               1-924, gnl|dasNov1|scaffold_319 (9927-8922)
               

               
               1-924, gnl|echTel1|scaffold_284232 (17648-16651)
               

               
               1-924, gnl|galGal2|chr7 (13081887-13080777)
               

               
               1-924, gnl|hg17|chr2 (208287481-208288479)
               

               
               1-924, gnl|Hg17|chr2 (208287667-208288600)
               

               
               1-924, gnl|loxAfr1|scaffold_12954 (34262-35253)
               

               
               1-924, gnl|mm7|chr1 (64839297-64840259)
               

               
               1-924, gnl|Mm7|chr1 (64839518-64840358)
               

               
               1-924, gnl|monDom2|scaffold_39 (15400990-15399981)
               

               
               1-924, gnl|oryCun1|scaffold_201542 (47706-48714)
               

               
               1-924, gnl|panTro1|chr13 (98338629-98339624)
               

               
               1-924, gnl|rheMac2|chr12 (71504256-71505252)
               

               
               1-924, gnl|rn3|chr9 (63381836-63382813)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr2 (62288265-62287329)
               

               
               1-924, gnl|canFam2|chr37 (18977411-18978409)
               

               
               1-924, gnl|dasNov1|scaffold_319 (9927-8922)
               

               
               1-924, gnl|echTel1|scaffold_284232 (17648-16651)
               

               
               1-924, gnl|galGal2|chr7 (13081887-13080777)
               

               
               1-924, gnl|hg17|chr2 (208287481-208288479)
               

               
               1-924, gnl|Hg17|chr2 (208287667-208288600)
               

               
               1-924, gnl|loxAfr1|scaffold_12954 (34262-35253)
               

               
               1-924, gnl|mm7|chr1 (64839297-64840259)
               

               
               1-924, gnl|Mm7|chr1 (64839518-64840358)
               

               
               1-924, gnl|monDom2|scaffold_39 (15400990-15399981)
               

               
               1-924, gnl|oryCun1|scaffold_201542 (47706-48714)
               

               
               1-924, gnl|panTro1|chr13 (98338629-98339624)
               

               
               1-924, gnl|rheMac2|chr12 (71504256-71505252)
               

               
               1-924, gnl|rn3|chr9 (63381836-63382813)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	231-384, - strand, RNAz p=0.957517
	261-361, - strand, RNAz p=0.601715

	1-924, gnl\|bosTau2\|chr2 (62288265-62287329)
	1-924, gnl\|canFam2\|chr37 (18977411-18978409)
	1-924, gnl\|dasNov1\|scaffold_319 (9927-8922)
	1-924, gnl\|echTel1\|scaffold_284232 (17648-16651)
	1-924, gnl\|galGal2\|chr7 (13081887-13080777)
	1-924, gnl\|hg17\|chr2 (208287481-208288479)
	1-924, gnl\|Hg17\|chr2 (208287667-208288600)
	1-924, gnl\|loxAfr1\|scaffold_12954 (34262-35253)
	1-924, gnl\|mm7\|chr1 (64839297-64840259)
	1-924, gnl\|Mm7\|chr1 (64839518-64840358)
	1-924, gnl\|monDom2\|scaffold_39 (15400990-15399981)
	1-924, gnl\|oryCun1\|scaffold_201542 (47706-48714)
	1-924, gnl\|panTro1\|chr13 (98338629-98339624)
	1-924, gnl\|rheMac2\|chr12 (71504256-71505252)
	1-924, gnl\|rn3\|chr9 (63381836-63382813)