Non-Coding RNA Search

Ss1.1-rspc021_k4.5

Sequence:


               
               AGAATTGCAGAACTCTGAATTTCCTCGATGGATTCTTAGTATTCCACATTTTAATAAAGG
ACATATTTTGAAAGCCTTGAGATAAGATAATCTTCTGAGGTCTTTTCTAGCTGTAAGATT
TTAAATTGCCTTTTTGGATTAGACTGGCTGAGTCTAATTTAGAATGCTCACTTTAAGAAT
GTTTCTGAAAATGAGCAAAGTTGTATAGATTTTTTGATCTTTCCAGGTATAGCCAATGAC
TTTATCCCCCAGCATCCTTCACCTTTCAAGGAAATAAACAGCGAGCCTAATGACTTGATA
TTACCCAGACCTCTTCCTTTTCTAGTATAAGCTCCAAGGTACTAACTGATCTACTGTGAA
ATATGTTTTTACTAGCCTTATCAAATAAATGAGCACAGTTTTTTGCTCACTCCATTAAAC
TGGGTGATAATTCCGTAGATGTGAATGTTAGGTTCTACTGTGATAACTAATCGTAAAAGT
TGTAAATTTGTTAAATGGATGAAATGTATACTTTTTGTATTCTGTACAGCTTGTCTTTTA
TAAATATGAACTACTTATATGCACTTACTATGATAGGAAATATGGGTGCCTTCTAGGATT
TATGAAGTGGTTTCATGAACTCTAAGAAGTTTGTTTTGTAAGTTATAAAGTTTCCCTATC
CTAACTCAATAACAAAGGGTTTACTCATAATATTGTAGAACTTTAGTTTGAGAAAATGGA
TTTGACTGTGTACTGAATTTAGAAGTTGAGGATAATATCTGTTTTATTCTTAGGGCAAAC
TGACCTATTGTGCAATAAATAATCTTTAGCAAGTAAATTTTAGCTAATTGAAGAGGGTTT
TTTTCTTATCATGTAGTTTCACACTCTTATATACTAATTGTTTATATTCCTTAGAGGATT
GTTTTGTATTGTACTCTGGGGGGTTGTGATGTTTTATGCTGTTTGAAAACTCATTTAAAT
TAGGCTTGATTTCATAATATAATGTATCTGGGTAATAAGGTTGCTTGAAAATATCTTTCG
GTTCAGTGATTTTTTTTAACATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATTGCAGAACTCTGAATTTCCTCGATGGATTCTTAGTATTCCACATTTTAATAAAGG
ACATATTTTGAAAGCCTTGAGATAAGATAATCTTCTGAGGTCTTTTCTAGCTGTAAGATT
TTAAATTGCCTTTTTGGATTAGACTGGCTGAGTCTAATTTAGAATGCTCACTTTAAGAAT
GTTTCTGAAAATGAGCAAAGTTGTATAGATTTTTTGATCTTTCCAGGTATAGCCAATGAC
TTTATCCCCCAGCATCCTTCACCTTTCAAGGAAATAAACAGCGAGCCTAATGACTTGATA
TTACCCAGACCTCTTCCTTTTCTAGTATAAGCTCCAAGGTACTAACTGATCTACTGTGAA
ATATGTTTTTACTAGCCTTATCAAATAAATGAGCACAGTTTTTTGCTCACTCCATTAAAC
TGGGTGATAATTCCGTAGATGTGAATGTTAGGTTCTACTGTGATAACTAATCGTAAAAGT
TGTAAATTTGTTAAATGGATGAAATGTATACTTTTTGTATTCTGTACAGCTTGTCTTTTA
TAAATATGAACTACTTATATGCACTTACTATGATAGGAAATATGGGTGCCTTCTAGGATT
TATGAAGTGGTTTCATGAACTCTAAGAAGTTTGTTTTGTAAGTTATAAAGTTTCCCTATC
CTAACTCAATAACAAAGGGTTTACTCATAATATTGTAGAACTTTAGTTTGAGAAAATGGA
TTTGACTGTGTACTGAATTTAGAAGTTGAGGATAATATCTGTTTTATTCTTAGGGCAAAC
TGACCTATTGTGCAATAAATAATCTTTAGCAAGTAAATTTTAGCTAATTGAAGAGGGTTT
TTTTCTTATCATGTAGTTTCACACTCTTATATACTAATTGTTTATATTCCTTAGAGGATT
GTTTTGTATTGTACTCTGGGGGGTTGTGATGTTTTATGCTGTTTGAAAACTCATTTAAAT
TAGGCTTGATTTCATAATATAATGTATCTGGGTAATAAGGTTGCTTGAAAATATCTTTCG
GTTCAGTGATTTTTTTTAACATTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               61-1034, gnl|bosTau2|chr15 (27765056-27766022)
               

               
               61-1034, gnl|Hg17|chr11 (10490818-10489837)
               

               
               61-1034, gnl|Mm7|chr7 (106729783-106728850)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-1034, gnl|bosTau2|chr15 (27765056-27766022)
               

               
               61-1034, gnl|Hg17|chr11 (10490818-10489837)
               

               
               61-1034, gnl|Mm7|chr7 (106729783-106728850)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               fco (0.314416)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	61-1034, gnl\|bosTau2\|chr15 (27765056-27766022)
	61-1034, gnl\|Hg17\|chr11 (10490818-10489837)
	61-1034, gnl\|Mm7\|chr7 (106729783-106728850)

	fco (0.314416)
	kid (0.259471)
	ret (0.257467)
	tra (0.246184)
	hea (0.204499)
	aor (0.195274)
	mgm (0.180343)
	fbs (0.175346)
	bfe (0.149858)
	clu (0.119646)
	spc (0.113366)
	cty (0.10408)