Non-Coding RNA Search

Ss1.1-rspc022_a8.5

Sequence:


               
               GGTGTAGGCCAGCAGCTGTAGCTCCAATTTGACCCCTAGCCTGGGAACTTCCATATGCCA
AGAGTGCGACCCTAAAAAAGAAAAAGAAAAAAAATACTACCATGACAACATCTTCTGAAT
CTGTAACTTTCCCCCAACTCTTGCTGGAAAAATGACCTCATCTAGGAGTATTGCCACAGC
TCCCCTAACAGGTCTCCCTCTTTCCTAACTCTCCCCTCTCCCAAGTCTCCCTTGACATTG
CTGTGAGGTTATCCTCCTTAAACACACTTCTCATAAAACTTCAGTGCTCCAAAGCCCTTC
AAGATTTCCCCCACTGATGGACCTGCTGTATAGCACAGGGAACTCTACCCAGTGTTCTGT
GATAATCCATATGGAAAAAGAATTTGAAAGAGAATGGATGTGTGTATTTGTGTAACTGAA
TCACTTTGTTGTACAGCAGAAATGATCACAACTTGTAAATCAACTCTACTTCAATAAAAC
CTTTAAACATGGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTAGGCCAGCAGCTGTAGCTCCAATTTGACCCCTAGCCTGGGAACTTCCATATGCCA
AGAGTGCGACCCTAAAAAAGAAAAAGAAAAAAAATACTACCATGACAACATCTTCTGAAT
CTGTAACTTTCCCCCAACTCTTGCTGGAAAAATGACCTCATCTAGGAGTATTGCCACAGC
TCCCCTAACAGGTCTCCCTCTTTCCTAACTCTCCCCTCTCCCAAGTCTCCCTTGACATTG
CTGTGAGGTTATCCTCCTTAAACACACTTCTCATAAAACTTCAGTGCTCCAAAGCCCTTC
AAGATTTCCCCCACTGATGGACCTGCTGTATAGCACAGGGAACTCTACCCAGTGTTCTGT
GATAATCCATATGGAAAAAGAATTTGAAAGAGAATGGATGTGTGTATTTGTGTAACTGAA
TCACTTTGTTGTACAGCAGAAATGATCACAACTTGTAAATCAACTCTACTTCAATAAAAC
CTTTAAACATGGCAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-251, - strand, RNAz p=0.992356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-251, - strand, RNAz p=0.992356

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               93-309, gnl|bosTau2|chr23 (23722721-23722939)
               

               
               93-309, gnl|Hg17|chr6 (32222251-32222040)
               


               
               319-479, gnl|bosTau2|chr18 (52251849-52251688)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-309, gnl|bosTau2|chr23 (23722721-23722939)
               

               
               93-309, gnl|Hg17|chr6 (32222251-32222040)
               


               
               319-479, gnl|bosTau2|chr18 (52251849-52251688)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	93-309, gnl\|bosTau2\|chr23 (23722721-23722939)
	93-309, gnl\|Hg17\|chr6 (32222251-32222040)

	319-479, gnl\|bosTau2\|chr18 (52251849-52251688)

	fcc (0.39557)
	fce (0.271592)
	hyp (0.142837)
	bla (0.124347)
	spc (0.113366)