Non-Coding RNA Search

Ss1.1-rspc022_i11.5

Sequence:


               
               GAACTCAGGTGAGGATGTGGGCAGGAAGAAGCCAGTGCAGTACCTGTGTCCTGAAACCAT
TTACTGGAGTTCGCCAGCAGAGGGAAGCACAGAGCAACGAACTCAGAAGCCTCTCCGTCT
AGATGTCTAAAAATCTAAAAGTGAAAAAGTATGAAAGTGGTACTTTTTGGACAGCACCTC
CACTGAACTCACACACCTCTAAAATAAATTGATAAAATGCCCAAACATGTTAATCCCTAA
ATAATTCCCTCACCATGAAAGTTTGAGGTGCGAGGACAAAATTTGATTTCCTCAATCAGA
GGTGTTTGCCCTGTGATTTTACCTTTGATTGATTCTCTTACAAAAGACTCTGTGAATGCA
AATACCAGTAATATGCACACATTTTCATAATGAAGCTTTTCAGGATGGTTTTTCTGTTGA
AAAATACTGAGAAAAATCATAATTCAGACTCACGGAACACCCTCTATCAAACTCAGCATT
TGATGCAAAATGCAGCTTCATAAAGGCTTCTAATTAAATCCACATTTGCTTGATGAGTGC
AATAGCACAGTATTCTATTTGTTAAATTTTTTCTCCTCAAAATAACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTCAGGTGAGGATGTGGGCAGGAAGAAGCCAGTGCAGTACCTGTGTCCTGAAACCAT
TTACTGGAGTTCGCCAGCAGAGGGAAGCACAGAGCAACGAACTCAGAAGCCTCTCCGTCT
AGATGTCTAAAAATCTAAAAGTGAAAAAGTATGAAAGTGGTACTTTTTGGACAGCACCTC
CACTGAACTCACACACCTCTAAAATAAATTGATAAAATGCCCAAACATGTTAATCCCTAA
ATAATTCCCTCACCATGAAAGTTTGAGGTGCGAGGACAAAATTTGATTTCCTCAATCAGA
GGTGTTTGCCCTGTGATTTTACCTTTGATTGATTCTCTTACAAAAGACTCTGTGAATGCA
AATACCAGTAATATGCACACATTTTCATAATGAAGCTTTTCAGGATGGTTTTTCTGTTGA
AAAATACTGAGAAAAATCATAATTCAGACTCACGGAACACCCTCTATCAAACTCAGCATT
TGATGCAAAATGCAGCTTCATAAAGGCTTCTAATTAAATCCACATTTGCTTGATGAGTGC
AATAGCACAGTATTCTATTTGTTAAATTTTTTCTCCTCAAAATAACTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               387-504, + strand, RNAz p=0.987878

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-504, + strand, RNAz p=0.987878

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               2-588, gnl|bosTau2|chr14 (10895925-10896522)
               

               
               2-588, gnl|Hg17|chr8 (53482998-53482402)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-588, gnl|bosTau2|chr14 (10895925-10896522)
               

               
               2-588, gnl|Hg17|chr8 (53482998-53482402)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spc (0.226732)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)

	2-588, gnl\|bosTau2\|chr14 (10895925-10896522)
	2-588, gnl\|Hg17\|chr8 (53482998-53482402)