Non-Coding RNA Search

Ss1.1-rspc023_a13.5.5

Sequence:


               
               GCCTGGCTCCAAGAGGTCATTTTTGAAACTGATACTACAGGTGGAAAAATGGCAGGAGGA
ATGTGAGGAAGGGGAGGGCCGGACGATTATCCACTGCCTAAATGGTGGTGGGCGAAGTGG
CATGTTCTGTGCTATAGGCATTGTTGTTGAAATGGTGAAACGGCAAAATGTTGTAGATGT
GTTCCATGCAGTCAAGACACTAAGGAACAGCAAGCCTAACATGGTGGAAGCCCCGGAGCA
GTACCGTTTCTGCTATGATGTAGCTTTGGAGTACCTGGAATCATCTTAGTTGGGTGAGAC
TTCAACATGCACCTAAACAGAATCTATTCACCTGTTGAGCCAGCAGCTGTTGAACCTGCT
ACACCCGTGCAGAAAGATTTTAATGTGGGGGGTGGGAGACTTTTACATTCGAGAGGTAAA
AGTATTTTTCTTATGAAGTTGTGTATCTTAATAAAAAGGACTTGATTAATTTCTATTCCT
GTATGAAAGCATCAACATTTCGTGCCACATAAATTATATTTAATAAGATGCAGATTCAAA
TGCGAACTTATCAGTGTTTGTACAGTGAATATGCAGCTTTTTCTCTCCTGGTTTTGGTAG
AGCAGATACCACATGTTGCATGAATTAACACTTTCTATGTGGCGTTTTTTTTCCTCCCTT
TTTAAGTAAAAGATGTTAAATCTTTAAAGGAAGAAGAAAAAAAAGCTGTGCAAATTCATA
GTAAAGTTCATTTTTTATATGTTTCAAGTGTAGCAGATCTCTATATAAATATATAAATAT
ATATAACTGGCTTATTTTCTTTTAATGTGCAATGATGGCTGGATCATTTAAAGTTCTTTT
TAGAAAAAAACATAAGCCAAAGACTCAAGTGTAAATATGTCTATATGGAGAAAGCACATT
ATATTTATTGGTTACTTACATTCCTTTTTTGATGGCTAAAATATTACCACCACACAATCA
TTTTTTTTTTCCTGAAGAAAGCTTTTTCTTTCACTAAAATCAATCACTAATCTAAATAAT
TTTTGTAGATTATTTTTTGTATGTTTAGTGTAAGTAGAGGGTAAACTTTTTATTCAGAAA
CCAGGAAGCAATGTTCTTTATAGTGATTCTCTTGTGTACATGCTTGTGAATTAAATTTAT
GTGAAACACCTTGGCAACTGGGTCTTTTAATATGGGACCAAATTAAAACAATCTGCTGAA
AATGTATAATTTTCCATGATTTCCTTAGGTGAATAATGGTTTGATGATCATATATGAGAA
CTGCACACATTGAAAGGCCTTGCTGATAACTTGCGTAATGTTGAACATAGCCTTTAAGCA
TCATTTAAATTTTCAGCCTGTAACCAAGCACAGGTCAGGAAATCAAGATGGCAACATTTA
TGCTTTCAGGATCAAGTGTTAACAAACTGTAAACTGTCAAGGTGATCAGTGTTTCTTTTG
ATGTTTACATGCACAAGCTTTGGGTTCTGAGCATAGAAAGTGTGACCAAATCAATGCCAG
ATTCCTGTTTCGTGCATTGTCACAGGATTCTCAACCTTACTGAGTGTGGTCTTGTACACA
CATGCTCCACGTAGCTGTAACTTCACATCATCAGCTTACAATCTGTTATTGACTAAAGCA
TTCCAGTATCTTGTTTCTAGATTGCCAGTTCATGACATGGTGCTTATGAAGATTTAATTA
AAGCAAGAGTGAAATAAAATTTTTATAATTATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGCTCCAAGAGGTCATTTTTGAAACTGATACTACAGGTGGAAAAATGGCAGGAGGA
ATGTGAGGAAGGGGAGGGCCGGACGATTATCCACTGCCTAAATGGTGGTGGGCGAAGTGG
CATGTTCTGTGCTATAGGCATTGTTGTTGAAATGGTGAAACGGCAAAATGTTGTAGATGT
GTTCCATGCAGTCAAGACACTAAGGAACAGCAAGCCTAACATGGTGGAAGCCCCGGAGCA
GTACCGTTTCTGCTATGATGTAGCTTTGGAGTACCTGGAATCATCTTAGTTGGGTGAGAC
TTCAACATGCACCTAAACAGAATCTATTCACCTGTTGAGCCAGCAGCTGTTGAACCTGCT
ACACCCGTGCAGAAAGATTTTAATGTGGGGGGTGGGAGACTTTTACATTCGAGAGGTAAA
AGTATTTTTCTTATGAAGTTGTGTATCTTAATAAAAAGGACTTGATTAATTTCTATTCCT
GTATGAAAGCATCAACATTTCGTGCCACATAAATTATATTTAATAAGATGCAGATTCAAA
TGCGAACTTATCAGTGTTTGTACAGTGAATATGCAGCTTTTTCTCTCCTGGTTTTGGTAG
AGCAGATACCACATGTTGCATGAATTAACACTTTCTATGTGGCGTTTTTTTTCCTCCCTT
TTTAAGTAAAAGATGTTAAATCTTTAAAGGAAGAAGAAAAAAAAGCTGTGCAAATTCATA
GTAAAGTTCATTTTTTATATGTTTCAAGTGTAGCAGATCTCTATATAAATATATAAATAT
ATATAACTGGCTTATTTTCTTTTAATGTGCAATGATGGCTGGATCATTTAAAGTTCTTTT
TAGAAAAAAACATAAGCCAAAGACTCAAGTGTAAATATGTCTATATGGAGAAAGCACATT
ATATTTATTGGTTACTTACATTCCTTTTTTGATGGCTAAAATATTACCACCACACAATCA
TTTTTTTTTTCCTGAAGAAAGCTTTTTCTTTCACTAAAATCAATCACTAATCTAAATAAT
TTTTGTAGATTATTTTTTGTATGTTTAGTGTAAGTAGAGGGTAAACTTTTTATTCAGAAA
CCAGGAAGCAATGTTCTTTATAGTGATTCTCTTGTGTACATGCTTGTGAATTAAATTTAT
GTGAAACACCTTGGCAACTGGGTCTTTTAATATGGGACCAAATTAAAACAATCTGCTGAA
AATGTATAATTTTCCATGATTTCCTTAGGTGAATAATGGTTTGATGATCATATATGAGAA
CTGCACACATTGAAAGGCCTTGCTGATAACTTGCGTAATGTTGAACATAGCCTTTAAGCA
TCATTTAAATTTTCAGCCTGTAACCAAGCACAGGTCAGGAAATCAAGATGGCAACATTTA
TGCTTTCAGGATCAAGTGTTAACAAACTGTAAACTGTCAAGGTGATCAGTGTTTCTTTTG
ATGTTTACATGCACAAGCTTTGGGTTCTGAGCATAGAAAGTGTGACCAAATCAATGCCAG
ATTCCTGTTTCGTGCATTGTCACAGGATTCTCAACCTTACTGAGTGTGGTCTTGTACACA
CATGCTCCACGTAGCTGTAACTTCACATCATCAGCTTACAATCTGTTATTGACTAAAGCA
TTCCAGTATCTTGTTTCTAGATTGCCAGTTCATGACATGGTGCTTATGAAGATTTAATTA
AAGCAAGAGTGAAATAAAATTTTTATAATTATAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-218, + strand, RNAz p=0.526079

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-218, + strand, RNAz p=0.526079

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-263, gnl|bosTau2|chr13 (45873324-45873485)
               

               
               100-263, gnl|Hg17|chr6 (128335995-128335832)
               

               
               100-263, gnl|Mm7|chr10 (28373448-28373600)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-263, gnl|bosTau2|chr13 (45873324-45873485)
               

               
               100-263, gnl|Hg17|chr6 (128335995-128335832)
               

               
               100-263, gnl|Mm7|chr10 (28373448-28373600)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               mgp (0.461361)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               gul (0.355177)
               

               
               nco (0.323468)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               gul (0.355177)
               

               
               nco (0.323468)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	100-263, gnl\|bosTau2\|chr13 (45873324-45873485)
	100-263, gnl\|Hg17\|chr6 (128335995-128335832)
	100-263, gnl\|Mm7\|chr10 (28373448-28373600)

	mgp (0.461361)
	aor (0.390549)
	kid (0.389206)
	gul (0.355177)
	nco (0.323468)
	liv (0.292569)
	ret (0.257467)
	ece (0.229305)
	spc (0.226732)
	fcc (0.197785)
	mgm (0.180343)
	mcp (0.170648)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	lyg (0.133103)
	sug (0.127291)
	jej (0.0989218)