Ss1.1-rspc023_c8.5
|
TGTGTTGAATTTTCTTCCATCACAATGAGCAACAAATTCCTAGGTACCTGGAAACTTGTC
TCCAGTGAGAACTTTGATGATTACATGAAAGCTCTGGGAGTGGGATTAGCCACCAGAAAA
CTGGGAAATTTGGCCAAACCCAGAGTGATTATCAGCAAGAAAGGGGATATTATAACTATA
AGAACTGAAAGTACCTTTAAAAACACAGAGATCTCCTTCAAGCTAGGCCAGGAATTTGAA
GAAACTACAGCTGACAATAGGAAAGCAAAGAGCGTTGTAACCTTGGCAAGAGGCTCGCTG
AATCAAGTACAAAAATGGGATGGCAAAGAGACAACAATAAAGAGAAAGCTGGTGGATGGA
AAAATGGTAGTGGAATGTAAGATGAAGGATGTGGTGTGCACCAGAATTTATGAGAAGGTC
TGAGAAAACTGTTTCCTCATTGAAGTGATATTTGATCATTTGATGTTGGAAATCAGCTGT
TTCCCTTGGCAAGGCCTGACTATACTGCAGTTTGTTTGCTTTTGTCTTAATAGATTTGAC
AGGCAAAGACCTAAACTGAGGATTAATCTAAACAGTTTCACTTTAGTTAAACAGTTTCAC
TTTGTACTTGTTGGCTGTTTTCAAGATTAAAGTATGTATATCAGCCAGACCTCAGGAGTG
GATAATGTCATTTAATTATCTGTGGAGTTCTAACCTGTGTTGTACTTTTGCATATTTGAA
ACGATAGTAAAAGGAAGTAATAGGATAGTAAAAGGAAGTAAATATATTGATTGTGGTCAC
CAACTCAAATGTCTTCAGGGTCCAGAAGGGTCGAGCGGAGAAGGATCACAAGTGAGGCGA
GCTAGAAGTAGAAGCTGTTTTCTAATGAAGACCCCCAGCTTGGGCTACAAAAGGCAGTCT
ACTTCTGCCAATTTAAAAAACGAAGGTTAATTTACAGACAGTGAAATGCACAGATACTAA
AGATAGAGTGCAATCCAATTTGACAAGTGCATGCACCCACATAATTCACATCCTGTTCAA
GATATAGCACCACTCCCTAATCCCGGAAGGTTTTCTCATGCTCCTTCCCAGTCAATGTTC
CGCCCTGTCCCAGCTCCAACAAAAGCAAGACGTGATTTCATTTCTATAGCTATAGATTAG
TTTTCCCTACTCTCACATTTCATATAAATGGAATTACATGTTATATGTTCTTTTCTGCTT
GCCTTTTTTAAACTTGGCATTATGTTTTTGAAACTCACCCATATGGTTGCGTGCAGTAGT
ACTTTGCTCCTTTTATTGCTGAGTAGTATTCCATTACGTGAATATATTGCAGTTTATCCA
TTCTTCTCTTAAGACCACTGAGCTATTTCCTGTTTTTGGCTTCTATGAATAAAACTACTA
TAAACGTTCTTGAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGTGTTGAATTTTCTTCCATCACAATGAGCAACAAATTCCTAGGTACCTGGAAACTTGTC
TCCAGTGAGAACTTTGATGATTACATGAAAGCTCTGGGAGTGGGATTAGCCACCAGAAAA
CTGGGAAATTTGGCCAAACCCAGAGTGATTATCAGCAAGAAAGGGGATATTATAACTATA
AGAACTGAAAGTACCTTTAAAAACACAGAGATCTCCTTCAAGCTAGGCCAGGAATTTGAA
GAAACTACAGCTGACAATAGGAAAGCAAAGAGCGTTGTAACCTTGGCAAGAGGCTCGCTG
AATCAAGTACAAAAATGGGATGGCAAAGAGACAACAATAAAGAGAAAGCTGGTGGATGGA
AAAATGGTAGTGGAATGTAAGATGAAGGATGTGGTGTGCACCAGAATTTATGAGAAGGTC
TGAGAAAACTGTTTCCTCATTGAAGTGATATTTGATCATTTGATGTTGGAAATCAGCTGT
TTCCCTTGGCAAGGCCTGACTATACTGCAGTTTGTTTGCTTTTGTCTTAATAGATTTGAC
AGGCAAAGACCTAAACTGAGGATTAATCTAAACAGTTTCACTTTAGTTAAACAGTTTCAC
TTTGTACTTGTTGGCTGTTTTCAAGATTAAAGTATGTATATCAGCCAGACCTCAGGAGTG
GATAATGTCATTTAATTATCTGTGGAGTTCTAACCTGTGTTGTACTTTTGCATATTTGAA
ACGATAGTAAAAGGAAGTAATAGGATAGTAAAAGGAAGTAAATATATTGATTGTGGTCAC
CAACTCAAATGTCTTCAGGGTCCAGAAGGGTCGAGCGGAGAAGGATCACAAGTGAGGCGA
GCTAGAAGTAGAAGCTGTTTTCTAATGAAGACCCCCAGCTTGGGCTACAAAAGGCAGTCT
ACTTCTGCCAATTTAAAAAACGAAGGTTAATTTACAGACAGTGAAATGCACAGATACTAA
AGATAGAGTGCAATCCAATTTGACAAGTGCATGCACCCACATAATTCACATCCTGTTCAA
GATATAGCACCACTCCCTAATCCCGGAAGGTTTTCTCATGCTCCTTCCCAGTCAATGTTC
CGCCCTGTCCCAGCTCCAACAAAAGCAAGACGTGATTTCATTTCTATAGCTATAGATTAG
TTTTCCCTACTCTCACATTTCATATAAATGGAATTACATGTTATATGTTCTTTTCTGCTT
GCCTTTTTTAAACTTGGCATTATGTTTTTGAAACTCACCCATATGGTTGCGTGCAGTAGT
ACTTTGCTCCTTTTATTGCTGAGTAGTATTCCATTACGTGAATATATTGCAGTTTATCCA
TTCTTCTCTTAAGACCACTGAGCTATTTCCTGTTTTTGGCTTCTATGAATAAAACTACTA
TAAACGTTCTTGAAAAAAAAAAAA
|
|
gi|61862792|ref|XP_582455.1| |
Protein identifier
|
gi|61862792|ref|XP_582455.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
97-270, gnl|bosTau2|chr14 (25635242-25635069) |
|
97-270, gnl|canFam2|chr29 (31625520-31625709) |
|
97-270, gnl|danRer3|chr20 (46904716-46904900) |
|
97-270, gnl|dasNov1|scaffold_184896 (3132-2943) |
|
97-270, gnl|echTel1|scaffold_308568 (50946-50756) |
|
97-270, gnl|fr1|chrUn (328022185-328022369) |
|
97-270, gnl|galGal2|chr2 (120785417-120785606) |
|
97-270, gnl|hg17|chr8 (82519604-82519793) |
|
97-270, gnl|Hg17|chr8 (82519780-82519607) |
|
97-270, gnl|loxAfr1|scaffold_10783 (64985-64795) |
|
97-270, gnl|mm7|chr3 (10190564-10190753) |
|
97-270, gnl|Mm7|chr3 (10190740-10190567) |
|
97-270, gnl|monDom2|scaffold_4 (75934011-75933823) |
|
97-270, gnl|oryCun1|scaffold_204330 (24291-24480) |
|
97-270, gnl|panTro1|chr7 (84651278-84651467) |
|
97-270, gnl|rheMac2|chr8 (83887121-83887310) |
|
97-270, gnl|rn3|chr2 (93512639-93512450) |
|
97-270, gnl|tetNig1|chrUn_random (90004021-90004203) |
|
97-270, gnl|xenTro1|scaffold_259 (1370159-1369969) |
| |
|
924-1392, gnl|bosTau2|chr10 (50185746-50185285) |
|
924-1392, gnl|Hg17|chr14 (60928243-60928697) |
| |
|
1140-1379, gnl|bosTau2|chr10 (60937657-60937412) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
97-270, gnl|bosTau2|chr14 (25635242-25635069) |
|
97-270, gnl|canFam2|chr29 (31625520-31625709) |
|
97-270, gnl|danRer3|chr20 (46904716-46904900) |
|
97-270, gnl|dasNov1|scaffold_184896 (3132-2943) |
|
97-270, gnl|echTel1|scaffold_308568 (50946-50756) |
|
97-270, gnl|fr1|chrUn (328022185-328022369) |
|
97-270, gnl|galGal2|chr2 (120785417-120785606) |
|
97-270, gnl|hg17|chr8 (82519604-82519793) |
|
97-270, gnl|Hg17|chr8 (82519780-82519607) |
|
97-270, gnl|loxAfr1|scaffold_10783 (64985-64795) |
|
97-270, gnl|mm7|chr3 (10190564-10190753) |
|
97-270, gnl|Mm7|chr3 (10190740-10190567) |
|
97-270, gnl|monDom2|scaffold_4 (75934011-75933823) |
|
97-270, gnl|oryCun1|scaffold_204330 (24291-24480) |
|
97-270, gnl|panTro1|chr7 (84651278-84651467) |
|
97-270, gnl|rheMac2|chr8 (83887121-83887310) |
|
97-270, gnl|rn3|chr2 (93512639-93512450) |
|
97-270, gnl|tetNig1|chrUn_random (90004021-90004203) |
|
97-270, gnl|xenTro1|scaffold_259 (1370159-1369969) |
| |
|
924-1392, gnl|bosTau2|chr10 (50185746-50185285) |
|
924-1392, gnl|Hg17|chr14 (60928243-60928697) |
| |
|
1140-1379, gnl|bosTau2|chr10 (60937657-60937412) |
|
spc (7.59551) |
|
fat (0.147427) |
|
sug (0.127291) |
|
spc (7.59551) |
|
fat (0.147427) |
|
sug (0.127291) |
