Ss1.1-rspc023_d10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCAAATCATCTGTGGAGTACACTATCTGTACTTTGCCCTAATTCTCTTTTTTGTTTC CATACTGGTCGTCCTGGCAATTTCTCTGTTAACAAAACCCATTCCTGATGTACATTTATA TCGCCTGTGCTGGGCTCTTCGGAATAGTACAGAAGAACGAATTGATTTAGATGCAGAAGA GAAAAGACACGAAGAGGCTCATGATGGTGTTGATGAAGATAATCCTGAGGAAACTCGTGG ATGTCTCAGGAAGGCTTATGACTTGTTCTGCGGTTTGCAAAGGAAAGGCCCCAAACTGAG TAAAGAGGAGGAAGAAGCCCAGAAAAGGAAGCTGACAGACACATCTGAGAAGCCTTTATG GAAGACTATAGTGAACATCAATGCCATCCTCCTCCTGGCAGTGGCAGTCTTTGTCCACGG CTATTTTGCCTAAACTCTCTCTGAGCTACTAGAATATTTATTAAATAAAGGATAATTTTC TTGAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCAAATCATCTGTGGAGTACACTATCTGTACTTTGCCCTAATTCTCTTTTTTGTTTC CATACTGGTCGTCCTGGCAATTTCTCTGTTAACAAAACCCATTCCTGATGTACATTTATA TCGCCTGTGCTGGGCTCTTCGGAATAGTACAGAAGAACGAATTGATTTAGATGCAGAAGA GAAAAGACACGAAGAGGCTCATGATGGTGTTGATGAAGATAATCCTGAGGAAACTCGTGG ATGTCTCAGGAAGGCTTATGACTTGTTCTGCGGTTTGCAAAGGAAAGGCCCCAAACTGAG TAAAGAGGAGGAAGAAGCCCAGAAAAGGAAGCTGACAGACACATCTGAGAAGCCTTTATG GAAGACTATAGTGAACATCAATGCCATCCTCCTCCTGGCAGTGGCAGTCTTTGTCCACGG CTATTTTGCCTAAACTCTCTCTGAGCTACTAGAATATTTATTAAATAAAGGATAATTTTC TTGAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 296-415, - strand, RNAz p=0.765436 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 296-415, - strand, RNAz p=0.765436 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-115, gnl|bosTau2|chr17 (43530769-43530655) | |
| 1-115, gnl|canFam2|chr26 (28004596-28004756) | |
| 1-115, gnl|canFam2|chr26 (28004607-28004832) | |
| 1-115, gnl|canFam2|chr26 (28004820-28004611) | |
| 1-115, gnl|dasNov1|scaffold_136790 (4624-4464) | |
| 1-115, gnl|dasNov1|scaffold_136790 (4613-4386) | |
| 1-115, gnl|dasNov1|scaffold_136790 (4399-4609) | |
| 1-115, gnl|echTel1|scaffold_295805 (5138-4919) | |
| 1-115, gnl|echTel1|scaffold_295805 (4933-5137) | |
| 1-115, gnl|hg17|chr1 (168452213-168452362) | |
| 1-115, gnl|hg17|chr18 (10606827-10607023) | |
| 1-115, gnl|Hg17|chr22 (30944922-30944808) | |
| 1-115, gnl|hg17|chr5 (59963368-59963565) | |
| 1-115, gnl|loxAfr1|scaffold_27604 (36460-36628) | |
| 1-115, gnl|loxAfr1|scaffold_27604 (36460-36686) | |
| 1-115, gnl|loxAfr1|scaffold_27604 (36672-36464) | |
| 1-115, gnl|mm7|chr10 (75838547-75838392) | |
| 1-115, gnl|mm7|chr10 (75838541-75838316) | |
| 1-115, gnl|Mm7|chr10 (75838422-75838536) | |
| 1-115, gnl|oryCun1|scaffold_105767 (5373-5591) | |
| 1-115, gnl|oryCun1|scaffold_177695 (9554-9704) | |
| 1-115, gnl|panTro1|chr1 (150751231-150751380) | |
| 1-115, gnl|panTro1|chr17 (2055820-2055630) | |
| 1-115, gnl|panTro1|chr4 (55990368-55990171) | |
| 1-115, gnl|rheMac2|chr1 (201442415-201442568) | |
| 1-115, gnl|rheMac2|chr10 (76120887-76121114) | |
| 1-115, gnl|rheMac2|chr6 (58339256-58339453) | |
| 1-115, gnl|rn3|chr20 (12879895-12880052) | |
| 1-115, gnl|rn3|chr20 (13002908-13002683) | |
| 1-115, gnl|rn3|chr20 (12880116-12879907) | |
| 217-484, gnl|bosTau2|chr17 (43529421-43529158) | |
| 217-484, gnl|Hg17|chr22 (30939268-30938990) | |
| 217-484, gnl|Mm7|chr10 (75844708-75844963) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-115, gnl|bosTau2|chr17 (43530769-43530655) | |
| 1-115, gnl|canFam2|chr26 (28004596-28004756) | |
| 1-115, gnl|canFam2|chr26 (28004607-28004832) | |
| 1-115, gnl|canFam2|chr26 (28004820-28004611) | |
| 1-115, gnl|dasNov1|scaffold_136790 (4624-4464) | |
| 1-115, gnl|dasNov1|scaffold_136790 (4613-4386) | |
| 1-115, gnl|dasNov1|scaffold_136790 (4399-4609) | |
| 1-115, gnl|echTel1|scaffold_295805 (5138-4919) | |
| 1-115, gnl|echTel1|scaffold_295805 (4933-5137) | |
| 1-115, gnl|hg17|chr1 (168452213-168452362) | |
| 1-115, gnl|hg17|chr18 (10606827-10607023) | |
| 1-115, gnl|Hg17|chr22 (30944922-30944808) | |
| 1-115, gnl|hg17|chr5 (59963368-59963565) | |
| 1-115, gnl|loxAfr1|scaffold_27604 (36460-36628) | |
| 1-115, gnl|loxAfr1|scaffold_27604 (36460-36686) | |
| 1-115, gnl|loxAfr1|scaffold_27604 (36672-36464) | |
| 1-115, gnl|mm7|chr10 (75838547-75838392) | |
| 1-115, gnl|mm7|chr10 (75838541-75838316) | |
| 1-115, gnl|Mm7|chr10 (75838422-75838536) | |
| 1-115, gnl|oryCun1|scaffold_105767 (5373-5591) | |
| 1-115, gnl|oryCun1|scaffold_177695 (9554-9704) | |
| 1-115, gnl|panTro1|chr1 (150751231-150751380) | |
| 1-115, gnl|panTro1|chr17 (2055820-2055630) | |
| 1-115, gnl|panTro1|chr4 (55990368-55990171) | |
| 1-115, gnl|rheMac2|chr1 (201442415-201442568) | |
| 1-115, gnl|rheMac2|chr10 (76120887-76121114) | |
| 1-115, gnl|rheMac2|chr6 (58339256-58339453) | |
| 1-115, gnl|rn3|chr20 (12879895-12880052) | |
| 1-115, gnl|rn3|chr20 (13002908-13002683) | |
| 1-115, gnl|rn3|chr20 (12880116-12879907) | |
| 217-484, gnl|bosTau2|chr17 (43529421-43529158) | |
| 217-484, gnl|Hg17|chr22 (30939268-30938990) | |
| 217-484, gnl|Mm7|chr10 (75844708-75844963) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| spc (0.226732) | |
| sin (0.174948) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.226732) | |
| sin (0.174948) | |
| ebs (0.118301) | |
| jej (0.0989218) |