Non-Coding RNA Search

Ss1.1-rspc023_e13.5

Sequence:


               
               TTAAAATTTCTATTGCCCTTTATTTAGGTTTTTCTTAAAATGTGTTTGCCGTGGATATTA
AGGGACCTGAAATGTGAAGGAAAGATGTCTGGCACTAATTGGTTAAATCACACCTGTGAA
AACAATTGGGGGTTTGGGGAGTTTGCTTTCTGTGTTGGTGAGTAATCAGTTGCTTTCAAT
CTACACACTACCTCCTGTGGCTAGACTTGACTAATACGCACTTAGAAAAGGACTGAAAGG
AGCCAAATCAGTCATTTGTTAGCCCTGTAACATTTCTGTTTTCATCACTTGATAAACTCT
AGGAGAGCTTAGTTTTACATTCAGAAAGTATTTATATTTGATAAGTCAAATGTTTAAGCT
GAAACTTCACAGAAATACCTGTTCATTCCTCAGCTGCACTAGTAGATAAGGGTGCAGTCG
GATTTGTTAGTGTAATGCTTTATACAGTGTTTGAAGCAGGTAGACCTATACTAAAATTGT
GTTTTCAGGTTCATTATGACTGGGTTGAGGGAAGGAGAATCTGTCTGATCCAAAGTAAAA
CTTTGATGATCTATTGAGAGTTAACTGTTATCAGCTTGCCAATTGAAACTGGATATTGAA
ACATTTTTAAAGAAATGCACTTTAATCTGAAATAAAATAAAAATAAAAACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAATTTCTATTGCCCTTTATTTAGGTTTTTCTTAAAATGTGTTTGCCGTGGATATTA
AGGGACCTGAAATGTGAAGGAAAGATGTCTGGCACTAATTGGTTAAATCACACCTGTGAA
AACAATTGGGGGTTTGGGGAGTTTGCTTTCTGTGTTGGTGAGTAATCAGTTGCTTTCAAT
CTACACACTACCTCCTGTGGCTAGACTTGACTAATACGCACTTAGAAAAGGACTGAAAGG
AGCCAAATCAGTCATTTGTTAGCCCTGTAACATTTCTGTTTTCATCACTTGATAAACTCT
AGGAGAGCTTAGTTTTACATTCAGAAAGTATTTATATTTGATAAGTCAAATGTTTAAGCT
GAAACTTCACAGAAATACCTGTTCATTCCTCAGCTGCACTAGTAGATAAGGGTGCAGTCG
GATTTGTTAGTGTAATGCTTTATACAGTGTTTGAAGCAGGTAGACCTATACTAAAATTGT
GTTTTCAGGTTCATTATGACTGGGTTGAGGGAAGGAGAATCTGTCTGATCCAAAGTAAAA
CTTTGATGATCTATTGAGAGTTAACTGTTATCAGCTTGCCAATTGAAACTGGATATTGAA
ACATTTTTAAAGAAATGCACTTTAATCTGAAATAAAATAAAAATAAAAACAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               40-657, gnl|bosTau2|chr2 (9218569-9219190)
               

               
               40-657, gnl|Hg17|chr2 (152163423-152164194)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-657, gnl|bosTau2|chr2 (9218569-9219190)
               

               
               40-657, gnl|Hg17|chr2 (152163423-152164194)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sag (0.36543)
               

               
               spc (0.340097)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               spc (0.340097)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	40-657, gnl\|bosTau2\|chr2 (9218569-9219190)
	40-657, gnl\|Hg17\|chr2 (152163423-152164194)

	sag (0.36543)
	spc (0.340097)
	thg (0.253582)
	mgp (0.230681)
	aor (0.195274)
	rec (0.17307)
	fhi (0.169578)
	ski (0.146735)
	lyg (0.133103)
	ret (0.128733)