Non-Coding RNA Search

Ss1.1-rspc023_m10.5

Sequence:


               
               GTGGCCACAGCCAAGTTCCTCTCATGTAGGCAGAACCTTAGAATGCCTGCAAGAAAACTG
TAGGCCATTCCTGAAGTGGGATTCCCACTCCACCCATGGTCGTTAGATTGCCACCTATGT
ATCATTCTCACCTCCCCTTCCCATTGCTATGTCCCTCTGTAAGTTGCTTACTCCTAACAA
GGATGTCACATTCCAGATCATTCTGCCTTTGCTAGGCTTTTGCTTAGAGCTGTCTTTCCA
TCATTATCACCTTGTGTATATTTCAGCTACCATTCCCACAGGTATACCTAATGCGGTCAC
AAGACATACTATTCTAAAATTTGTTTATTGATTACTTTCCTAGATAGTAGGCCTTTTCAT
AAAAGTCACAGTTTTTGACTTTAAGGAAAGAAAAGGAAGCTGCAGGGACATTTAACTCCA
AAGTGGGATGGGAAAGAACTCCAGCAAGTCCAATGGTTACAAATTAAAAATCAGCATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCCACAGCCAAGTTCCTCTCATGTAGGCAGAACCTTAGAATGCCTGCAAGAAAACTG
TAGGCCATTCCTGAAGTGGGATTCCCACTCCACCCATGGTCGTTAGATTGCCACCTATGT
ATCATTCTCACCTCCCCTTCCCATTGCTATGTCCCTCTGTAAGTTGCTTACTCCTAACAA
GGATGTCACATTCCAGATCATTCTGCCTTTGCTAGGCTTTTGCTTAGAGCTGTCTTTCCA
TCATTATCACCTTGTGTATATTTCAGCTACCATTCCCACAGGTATACCTAATGCGGTCAC
AAGACATACTATTCTAAAATTTGTTTATTGATTACTTTCCTAGATAGTAGGCCTTTTCAT
AAAAGTCACAGTTTTTGACTTTAAGGAAAGAAAAGGAAGCTGCAGGGACATTTAACTCCA
AAGTGGGATGGGAAAGAACTCCAGCAAGTCCAATGGTTACAAATTAAAAATCAGCATTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-480, + strand, RNAz p=0.769163

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-480, + strand, RNAz p=0.769163

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001248, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001248, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               52-480, gnl|bosTau2|chr22 (11593511-11593944)
               

               
               52-480, gnl|Hg17|chr3 (40444608-40445058)
               

               
               52-480, gnl|Mm7|chr9 (120265691-120266098)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-480, gnl|bosTau2|chr22 (11593511-11593944)
               

               
               52-480, gnl|Hg17|chr3 (40444608-40445058)
               

               
               52-480, gnl|Mm7|chr9 (120265691-120266098)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               gul (0.355177)
               

               
               sag (0.182715)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               sag (0.182715)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	52-480, gnl\|bosTau2\|chr22 (11593511-11593944)
	52-480, gnl\|Hg17\|chr3 (40444608-40445058)
	52-480, gnl\|Mm7\|chr9 (120265691-120266098)