Non-Coding RNA Search

Ss1.1-rspc023_o17.5

Sequence:


               
               TTTCCCCCTATTTCCTCTTAATGAATAACATTATGTTCAATGTATAATTAAGAGCAACAA
AGCTCTGATATTTGTTCAGAATACCTAAGAGAACTGCTTAAGTGGTATCTTTAAACAGAG
CCATTATTAGAACATCTTTGGAACTGTGTGTAATGGCTTTTCTAAAATGTAATTTTTGAA
TGTTCACGTGGGATATTTCCAAAGTTTTAACTTTACAAAATCACCTTCTTCATCCCATTT
TGTTGTCTGGATCACACCATCTCTTCCATAGGTGCCAAAGTTTAGTTCTTTGGATTGGAA
CATTCGAAGGTCTCTGTATTGGTACCTGCTTTGTCTGAGAAGTTCGAGAGCTGGTTAACA
AGTCAGACTTTACATGATATACAGAAGTGGCAGATAAATTGGACCTCTTGTTTGTGAAAA
TGAGTTCCCACTTCCCTCCTCAGCAGGCTCTTCGTTGTGGCTGCCATGGGACAGCAACAG
TATTCATTTGAGAATCGGGGCGCCAGTCACAGGCATCATAAAATCAGGACCTCCCACCTG
CACCATTCGCTCGTTAGCAACTCTTAGTTTATTCCATGTCATTCTGTTTACCGAGCATTT
GCACTACACACATTGAGTGTATGCTTTATTTATTCGTAGTTCGAAATCTTATGTCAGACA
GCTGAGAGTAGAAAAATACATTTACCTAATGATACTCACTAATGTGGGAAGAGTTATGAA
AATTCTAGAATGCTGTAAATCCTGTCATACACTATGACATACAACTTCATCAAACTCCCA
CCAGGAGCCACTCTCCTGTACTTAGAAATAACATCACAAGTAGTTTTCTAAGGTACAAGG
CAGGCAAATATATTGCTCTCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCCCCTATTTCCTCTTAATGAATAACATTATGTTCAATGTATAATTAAGAGCAACAA
AGCTCTGATATTTGTTCAGAATACCTAAGAGAACTGCTTAAGTGGTATCTTTAAACAGAG
CCATTATTAGAACATCTTTGGAACTGTGTGTAATGGCTTTTCTAAAATGTAATTTTTGAA
TGTTCACGTGGGATATTTCCAAAGTTTTAACTTTACAAAATCACCTTCTTCATCCCATTT
TGTTGTCTGGATCACACCATCTCTTCCATAGGTGCCAAAGTTTAGTTCTTTGGATTGGAA
CATTCGAAGGTCTCTGTATTGGTACCTGCTTTGTCTGAGAAGTTCGAGAGCTGGTTAACA
AGTCAGACTTTACATGATATACAGAAGTGGCAGATAAATTGGACCTCTTGTTTGTGAAAA
TGAGTTCCCACTTCCCTCCTCAGCAGGCTCTTCGTTGTGGCTGCCATGGGACAGCAACAG
TATTCATTTGAGAATCGGGGCGCCAGTCACAGGCATCATAAAATCAGGACCTCCCACCTG
CACCATTCGCTCGTTAGCAACTCTTAGTTTATTCCATGTCATTCTGTTTACCGAGCATTT
GCACTACACACATTGAGTGTATGCTTTATTTATTCGTAGTTCGAAATCTTATGTCAGACA
GCTGAGAGTAGAAAAATACATTTACCTAATGATACTCACTAATGTGGGAAGAGTTATGAA
AATTCTAGAATGCTGTAAATCCTGTCATACACTATGACATACAACTTCATCAAACTCCCA
CCAGGAGCCACTCTCCTGTACTTAGAAATAACATCACAAGTAGTTTTCTAAGGTACAAGG
CAGGCAAATATATTGCTCTCTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               682-864, + strand, RNAz p=0.668766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               682-864, + strand, RNAz p=0.668766

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               8-442, gnl|bosTau2|chr24 (20169541-20169954)
               

               
               8-442, gnl|Hg17|chr4 (115955833-115956273)
               

               
               8-442, gnl|Mm7|chr3 (125704438-125704049)
               


               
               452-864, gnl|bosTau2|chr24 (20169993-20170410)
               

               
               452-864, gnl|canFam2|chr32 (37155923-37156689)
               

               
               452-864, gnl|echTel1|scaffold_61561 (1109-350)
               

               
               452-864, gnl|galGal2|chr4 (56775532-56774776)
               

               
               452-864, gnl|hg17|chr4 (115956219-115957000)
               

               
               452-864, gnl|Hg17|chr4 (115956304-115956723)
               

               
               452-864, gnl|loxAfr1|scaffold_4547 (49955-50725)
               

               
               452-864, gnl|mm7|chr3 (125704098-125703335)
               

               
               452-864, gnl|Mm7|chr3 (125704017-125703608)
               

               
               452-864, gnl|monDom2|scaffold_9 (78680807-78680010)
               

               
               452-864, gnl|oryCun1|scaffold_134396 (20497-19730)
               

               
               452-864, gnl|panTro1|chr3 (132635335-132636116)
               

               
               452-864, gnl|rheMac2|chr5 (107558492-107559273)
               

               
               452-864, gnl|rn3|chr2 (222965469-222964717)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-442, gnl|bosTau2|chr24 (20169541-20169954)
               

               
               8-442, gnl|Hg17|chr4 (115955833-115956273)
               

               
               8-442, gnl|Mm7|chr3 (125704438-125704049)
               


               
               452-864, gnl|bosTau2|chr24 (20169993-20170410)
               

               
               452-864, gnl|canFam2|chr32 (37155923-37156689)
               

               
               452-864, gnl|echTel1|scaffold_61561 (1109-350)
               

               
               452-864, gnl|galGal2|chr4 (56775532-56774776)
               

               
               452-864, gnl|hg17|chr4 (115956219-115957000)
               

               
               452-864, gnl|Hg17|chr4 (115956304-115956723)
               

               
               452-864, gnl|loxAfr1|scaffold_4547 (49955-50725)
               

               
               452-864, gnl|mm7|chr3 (125704098-125703335)
               

               
               452-864, gnl|Mm7|chr3 (125704017-125703608)
               

               
               452-864, gnl|monDom2|scaffold_9 (78680807-78680010)
               

               
               452-864, gnl|oryCun1|scaffold_134396 (20497-19730)
               

               
               452-864, gnl|panTro1|chr3 (132635335-132636116)
               

               
               452-864, gnl|rheMac2|chr5 (107558492-107559273)
               

               
               452-864, gnl|rn3|chr2 (222965469-222964717)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

	8-442, gnl\|bosTau2\|chr24 (20169541-20169954)
	8-442, gnl\|Hg17\|chr4 (115955833-115956273)
	8-442, gnl\|Mm7\|chr3 (125704438-125704049)

	452-864, gnl\|bosTau2\|chr24 (20169993-20170410)
	452-864, gnl\|canFam2\|chr32 (37155923-37156689)
	452-864, gnl\|echTel1\|scaffold_61561 (1109-350)
	452-864, gnl\|galGal2\|chr4 (56775532-56774776)
	452-864, gnl\|hg17\|chr4 (115956219-115957000)
	452-864, gnl\|Hg17\|chr4 (115956304-115956723)
	452-864, gnl\|loxAfr1\|scaffold_4547 (49955-50725)
	452-864, gnl\|mm7\|chr3 (125704098-125703335)
	452-864, gnl\|Mm7\|chr3 (125704017-125703608)
	452-864, gnl\|monDom2\|scaffold_9 (78680807-78680010)
	452-864, gnl\|oryCun1\|scaffold_134396 (20497-19730)
	452-864, gnl\|panTro1\|chr3 (132635335-132636116)
	452-864, gnl\|rheMac2\|chr5 (107558492-107559273)
	452-864, gnl\|rn3\|chr2 (222965469-222964717)

	fbs (0.350693)
	spc (0.340097)
	fhi (0.339155)
	fcc (0.197785)
	duo (0.172801)
	lyg (0.133103)
	ecc (0.115035)