Non-Coding RNA Search

Ss1.1-rspc023_o18.5

Sequence:


               
               TACCTTTCAGTCACAGGCCTTTGATGCAGGAGTTCTCCACTTTCCATTGCCTTATCCCTT
CTTTGCAAACTACCTACGGTTATTAGCACTTAAAGCACAATTTTGAAGCGGATTAAAATG
ACCTTAGTCCCAAAGGAATAATTTGTGTCAAACTGCCTTATGAGCATTAAAAAGAGACAT
GTTGAATGAAAGAAATAGCAAGACACTCATAAGCCCTAACTCAGATCCACTGGCATTTTA
TGAGATGGGGGAACTATACTTTTTGTAATTATATAGTTTTAGAAATCGAAAGAGACGGAT
TACAAATTACATCAAGTAACAGTAATATGGAAACAAAGTTCTAACGGATAAATTGTGTGC
TTAACCATAATGCCCTCATCTTGTATCTGTGTGACCAAACCAGACAGGTCTTCCTTGGAA
AAGTGGGGACGAACTCAGATGTACTCCCTACATCTTTACTAAAGTCAAGGTTTGTTAGCA
AATTCTCTTCACTGTAAGGCTTACTTATGAAATGGTATATTTTTTCCCAAATATTTTTGT
GACACCATCTTTCCTAACTGTACAATAAAAGTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCTTTCAGTCACAGGCCTTTGATGCAGGAGTTCTCCACTTTCCATTGCCTTATCCCTT
CTTTGCAAACTACCTACGGTTATTAGCACTTAAAGCACAATTTTGAAGCGGATTAAAATG
ACCTTAGTCCCAAAGGAATAATTTGTGTCAAACTGCCTTATGAGCATTAAAAAGAGACAT
GTTGAATGAAAGAAATAGCAAGACACTCATAAGCCCTAACTCAGATCCACTGGCATTTTA
TGAGATGGGGGAACTATACTTTTTGTAATTATATAGTTTTAGAAATCGAAAGAGACGGAT
TACAAATTACATCAAGTAACAGTAATATGGAAACAAAGTTCTAACGGATAAATTGTGTGC
TTAACCATAATGCCCTCATCTTGTATCTGTGTGACCAAACCAGACAGGTCTTCCTTGGAA
AAGTGGGGACGAACTCAGATGTACTCCCTACATCTTTACTAAAGTCAAGGTTTGTTAGCA
AATTCTCTTCACTGTAAGGCTTACTTATGAAATGGTATATTTTTTCCCAAATATTTTTGT
GACACCATCTTTCCTAACTGTACAATAAAAGTCTAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-576, gnl|bosTau2|chr2 (5490374-5490939)
               

               
               2-576, gnl|Hg17|chr2 (190893126-190893706)
               

               
               2-576, gnl|Mm7|chr1 (53156388-53155852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-576, gnl|bosTau2|chr2 (5490374-5490939)
               

               
               2-576, gnl|Hg17|chr2 (190893126-190893706)
               

               
               2-576, gnl|Mm7|chr1 (53156388-53155852)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pro (0.512033)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	2-576, gnl\|bosTau2\|chr2 (5490374-5490939)
	2-576, gnl\|Hg17\|chr2 (190893126-190893706)
	2-576, gnl\|Mm7\|chr1 (53156388-53155852)

	pro (0.512033)
	hlv (0.278513)
	nms (0.213858)
	hea (0.204499)
	aor (0.195274)
	ova (0.129132)
	spc (0.113366)