Non-Coding RNA Search

Ss1.1-rspc024_c14.5

Sequence:


               
               TAAAAACTTCAGCTCTGCCTACAGCAGTTTACAAAAATACTAAACTGCAATCAATGTAAA
TAAAATGCTTCGCTATCCTGAGACCAGAAGGAATCTCAGGCTAATAAGGAATCCGGTTTG
CATATGCTGTCGAGAGGGTGTCACCCACCCGGGGTTTCAGTGTAAATGCGATCGCTGTAC
AACGTGGACCCATCTGGCATAGAGCAAGCTGCTTTCTTGTTTTTCTAGAATAGTTCTCAC
TGCCTTACTTAAATCGAGTTGATAAACTTAATGCAACTGTTTCTATGATCCTAGAGAAAG
GACTGAAATGTAATTGAAAACTTTCTGACTGTAGTAAGCTTTAGGATTTTAACTGCACTA
CTGTGTTTGGTGACTGTGCCAGTCGCTTGCTTTCTGTGTGTTTGCCCCGCCTTTGGTATC
TTAGCAAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAACTTCAGCTCTGCCTACAGCAGTTTACAAAAATACTAAACTGCAATCAATGTAAA
TAAAATGCTTCGCTATCCTGAGACCAGAAGGAATCTCAGGCTAATAAGGAATCCGGTTTG
CATATGCTGTCGAGAGGGTGTCACCCACCCGGGGTTTCAGTGTAAATGCGATCGCTGTAC
AACGTGGACCCATCTGGCATAGAGCAAGCTGCTTTCTTGTTTTTCTAGAATAGTTCTCAC
TGCCTTACTTAAATCGAGTTGATAAACTTAATGCAACTGTTTCTATGATCCTAGAGAAAG
GACTGAAATGTAATTGAAAACTTTCTGACTGTAGTAAGCTTTAGGATTTTAACTGCACTA
CTGTGTTTGGTGACTGTGCCAGTCGCTTGCTTTCTGTGTGTTTGCCCCGCCTTTGGTATC
TTAGCAAAGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-117, + strand, RNAz p=0.917845
               

               
               283-396, - strand, RNAz p=0.664513

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.917845
               

               
               283-396, - strand, RNAz p=0.664513

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-432, gnl|bosTau2|chr18 (34524709-34525141)
               

               
               1-432, gnl|canFam2|chr1 (123888090-123887735)
               

               
               1-432, gnl|dasNov1|scaffold_8809 (39601-39961)
               

               
               1-432, gnl|echTel1|scaffold_287523 (142621-142213)
               

               
               1-432, gnl|galGal2|chr11 (9163454-9163813)
               

               
               1-432, gnl|hg17|chr19 (35895192-35895546)
               

               
               1-432, gnl|Hg17|chr19 (35895239-35895670)
               

               
               1-432, gnl|loxAfr1|scaffold_2844 (7753-8084)
               

               
               1-432, gnl|mm7|chr7 (34210406-34209991)
               

               
               1-432, gnl|Mm7|chr7 (34210356-34209834)
               

               
               1-432, gnl|monDom2|scaffold_35 (6697128-6696773)
               

               
               1-432, gnl|oryCun1|scaffold_212797 (14382-14746)
               

               
               1-432, gnl|panTro1|chr20 (32379714-32380068)
               

               
               1-432, gnl|rheMac2|chr19 (37204898-37205252)
               

               
               1-432, gnl|rn3|chr1 (89872299-89871884)
               

               
               1-432, gnl|xenTro1|scaffold_83 (1864902-1864555)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chr18 (34524709-34525141)
               

               
               1-432, gnl|canFam2|chr1 (123888090-123887735)
               

               
               1-432, gnl|dasNov1|scaffold_8809 (39601-39961)
               

               
               1-432, gnl|echTel1|scaffold_287523 (142621-142213)
               

               
               1-432, gnl|galGal2|chr11 (9163454-9163813)
               

               
               1-432, gnl|hg17|chr19 (35895192-35895546)
               

               
               1-432, gnl|Hg17|chr19 (35895239-35895670)
               

               
               1-432, gnl|loxAfr1|scaffold_2844 (7753-8084)
               

               
               1-432, gnl|mm7|chr7 (34210406-34209991)
               

               
               1-432, gnl|Mm7|chr7 (34210356-34209834)
               

               
               1-432, gnl|monDom2|scaffold_35 (6697128-6696773)
               

               
               1-432, gnl|oryCun1|scaffold_212797 (14382-14746)
               

               
               1-432, gnl|panTro1|chr20 (32379714-32380068)
               

               
               1-432, gnl|rheMac2|chr19 (37204898-37205252)
               

               
               1-432, gnl|rn3|chr1 (89872299-89871884)
               

               
               1-432, gnl|xenTro1|scaffold_83 (1864902-1864555)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spc (0.340097)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)

	1-117, + strand, RNAz p=0.917845
	283-396, - strand, RNAz p=0.664513

	1-432, gnl\|bosTau2\|chr18 (34524709-34525141)
	1-432, gnl\|canFam2\|chr1 (123888090-123887735)
	1-432, gnl\|dasNov1\|scaffold_8809 (39601-39961)
	1-432, gnl\|echTel1\|scaffold_287523 (142621-142213)
	1-432, gnl\|galGal2\|chr11 (9163454-9163813)
	1-432, gnl\|hg17\|chr19 (35895192-35895546)
	1-432, gnl\|Hg17\|chr19 (35895239-35895670)
	1-432, gnl\|loxAfr1\|scaffold_2844 (7753-8084)
	1-432, gnl\|mm7\|chr7 (34210406-34209991)
	1-432, gnl\|Mm7\|chr7 (34210356-34209834)
	1-432, gnl\|monDom2\|scaffold_35 (6697128-6696773)
	1-432, gnl\|oryCun1\|scaffold_212797 (14382-14746)
	1-432, gnl\|panTro1\|chr20 (32379714-32380068)
	1-432, gnl\|rheMac2\|chr19 (37204898-37205252)
	1-432, gnl\|rn3\|chr1 (89872299-89871884)
	1-432, gnl\|xenTro1\|scaffold_83 (1864902-1864555)