Non-Coding RNA Search

Ss1.1-rspc024_d8.5

Sequence:


               
               GAAAGAAAGAAAGCAGAAGAGAGAAAGGGCAGGCTTTTGTCACAAAGGATATAGAAGTCA
GAGGAACAACCAGATTTACTGAAAACCTCAGAATCTTGGAGTAATCTTTTAGAGTAAGAT
TCAGTGACCTCACTTGAGAATCGAAAGACAGATTCTGGAGAATTCACTGATTAGGTCAGG
AGTCCTTAAACTTACCTTCACAAAACAGGGAGGAACTTCCCTTGGGTCCTTTTCATTGGC
TATCATGTTCCTGTCGCATATGGCAGCAGTCTCTGTAACTAGCCTCGGCCTGAACTGCTA
GGTCTGTTTGGGTCTAATATGAAATAGCTGTAGCGCCCCAGTACTGAGGTGTGATTGAAA
TTTTTTCTGGAGAGCTTCTGTTTGTTTGTTTGTTTGTTTTATTAAAAACATAGATGAGTA
AGCCACAGGTCTAAGTTAAAGGATAGACAAGACAAGTTGAAACTGTCTCCCTTACATTTT
TCCCCTTTAAGCCTCAAGAAGTCCATCTGGGGAAGTCCTTGACATTGTGTAAGGAAAATA
GATAGTTGTCATAGGAAGAGAAATGAAAAAACAAGTTAGATGCAAAGACGACTGTTTAAA
GGATAGTTTTCCTAACCTGTCACTCTTAAGAAGTAATAAACTTGCGTAGTGGAGCCCTCA
GCAATGGAAAAGGGTTTCATTAGCTCATGCTAACTTGCCCTCCTGGAGCAAGCCCCTTCA
GAGCAGAAATAAAGCTTAAAGAAATAATGCTGCTTCTGTGATTCTTGCAACCTTTTACTT
TCTGCGATGTAAACAAAAACCATTCACGAAGAGTATTCATTTTTCACATGACTTCTTAAT
TCTCCGTGGAAGTGATATGCATGTTAGGACACACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAAAGAAAGCAGAAGAGAGAAAGGGCAGGCTTTTGTCACAAAGGATATAGAAGTCA
GAGGAACAACCAGATTTACTGAAAACCTCAGAATCTTGGAGTAATCTTTTAGAGTAAGAT
TCAGTGACCTCACTTGAGAATCGAAAGACAGATTCTGGAGAATTCACTGATTAGGTCAGG
AGTCCTTAAACTTACCTTCACAAAACAGGGAGGAACTTCCCTTGGGTCCTTTTCATTGGC
TATCATGTTCCTGTCGCATATGGCAGCAGTCTCTGTAACTAGCCTCGGCCTGAACTGCTA
GGTCTGTTTGGGTCTAATATGAAATAGCTGTAGCGCCCCAGTACTGAGGTGTGATTGAAA
TTTTTTCTGGAGAGCTTCTGTTTGTTTGTTTGTTTGTTTTATTAAAAACATAGATGAGTA
AGCCACAGGTCTAAGTTAAAGGATAGACAAGACAAGTTGAAACTGTCTCCCTTACATTTT
TCCCCTTTAAGCCTCAAGAAGTCCATCTGGGGAAGTCCTTGACATTGTGTAAGGAAAATA
GATAGTTGTCATAGGAAGAGAAATGAAAAAACAAGTTAGATGCAAAGACGACTGTTTAAA
GGATAGTTTTCCTAACCTGTCACTCTTAAGAAGTAATAAACTTGCGTAGTGGAGCCCTCA
GCAATGGAAAAGGGTTTCATTAGCTCATGCTAACTTGCCCTCCTGGAGCAAGCCCCTTCA
GAGCAGAAATAAAGCTTAAAGAAATAATGCTGCTTCTGTGATTCTTGCAACCTTTTACTT
TCTGCGATGTAAACAAAAACCATTCACGAAGAGTATTCATTTTTCACATGACTTCTTAAT
TCTCCGTGGAAGTGATATGCATGTTAGGACACACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               229-332, + strand, RNAz p=0.513268

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-332, + strand, RNAz p=0.513268

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               131-876, gnl|bosTau2|chr16 (42040476-42039757)
               

               
               131-876, gnl|Hg17|chr1 (176988565-176987468)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-876, gnl|bosTau2|chr16 (42040476-42039757)
               

               
               131-876, gnl|Hg17|chr1 (176988565-176987468)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spc (0.226732)
               

               
               eye (0.170503)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               eye (0.170503)
               

               
               ldo (0.0970026)

	131-876, gnl\|bosTau2\|chr16 (42040476-42039757)
	131-876, gnl\|Hg17\|chr1 (176988565-176987468)