Non-Coding RNA Search

Ss1.1-rspc024_n23.5

Sequence:


               
               GTTTTTTTGTTTTTTTGTGTTTTTTTTAGGAGACATTAGCAGAAGACATTTAGATTCTTA
CTCTGTGACTTCTTAGGAAGTTTTTCATTGGCAGGGGCAGGAGGGGGCGGGCAGGGGGAG
GATGTCACTTAGAAGTTCTCTCACCCTGAATATCTTGACCAAGCTCAAGGAACCATCACA
CTCTAAAATGGCTTCACTGAACACTAACTGTCGACTTTTTTACTGGATAAGGGCCAGGTA
ATAGCCGAAGGAGGCACCACTCCATGAAGTCTGCTTACACATTTACAAATTGTCTATGAG
TTTAAAATACTTTTTACTGTGTGCAGATATAAGGGGAATAGGGCATTCTGTAGAATTTAT
ACATGTCTAGTTGTAAAGGATGTCATGTGTACTGCAGATGTGTGTTCTCTGGGCTTTGTG
TATCTGTACAGTACCTTTCATTAAAAAAAAAATTGTGGACAAATTTGTTCTGGTGGTGTG
AGGGGGGAGAATGGCAGTTTATATAAAGTAATCATGCTGTAATATAGTACATGTAACAAA
AGATCTGGAAGTAACCCTCCCCTGGCCCATGGAAAAATCTGGTTGTCTTCTAGGTTCCAA
AATGAAGATGTATGGATACTCTGGCAGACTGCATGTTGTATAATTTGAAAAATATTAAAA
GTGGAAAATAAAGTCGAATTAAACTTTGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTGTTTTTTTGTGTTTTTTTTAGGAGACATTAGCAGAAGACATTTAGATTCTTA
CTCTGTGACTTCTTAGGAAGTTTTTCATTGGCAGGGGCAGGAGGGGGCGGGCAGGGGGAG
GATGTCACTTAGAAGTTCTCTCACCCTGAATATCTTGACCAAGCTCAAGGAACCATCACA
CTCTAAAATGGCTTCACTGAACACTAACTGTCGACTTTTTTACTGGATAAGGGCCAGGTA
ATAGCCGAAGGAGGCACCACTCCATGAAGTCTGCTTACACATTTACAAATTGTCTATGAG
TTTAAAATACTTTTTACTGTGTGCAGATATAAGGGGAATAGGGCATTCTGTAGAATTTAT
ACATGTCTAGTTGTAAAGGATGTCATGTGTACTGCAGATGTGTGTTCTCTGGGCTTTGTG
TATCTGTACAGTACCTTTCATTAAAAAAAAAATTGTGGACAAATTTGTTCTGGTGGTGTG
AGGGGGGAGAATGGCAGTTTATATAAAGTAATCATGCTGTAATATAGTACATGTAACAAA
AGATCTGGAAGTAACCCTCCCCTGGCCCATGGAAAAATCTGGTTGTCTTCTAGGTTCCAA
AATGAAGATGTATGGATACTCTGGCAGACTGCATGTTGTATAATTTGAAAAATATTAAAA
GTGGAAAATAAAGTCGAATTAAACTTTGAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-433, - strand, RNAz p=0.98704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-433, - strand, RNAz p=0.98704

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               333-445, + strand, RNAmicro p=0.999806

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               333-445, + strand, RNAmicro p=0.999806

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-688, gnl|bosTau2|chr2 (33664257-33664948)
               

               
               10-688, gnl|Hg17|chr2 (149708126-149708781)
               

               
               10-688, gnl|Mm7|chr2 (49781443-49782088)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-688, gnl|bosTau2|chr2 (33664257-33664948)
               

               
               10-688, gnl|Hg17|chr2 (149708126-149708781)
               

               
               10-688, gnl|Mm7|chr2 (49781443-49782088)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               spc (1.13366)
               

               
               cbe (0.956938)
               

               
               fco (0.943248)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.13366)
               

               
               cbe (0.956938)
               

               
               fco (0.943248)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               eru (0.120048)

	10-688, gnl\|bosTau2\|chr2 (33664257-33664948)
	10-688, gnl\|Hg17\|chr2 (149708126-149708781)
	10-688, gnl\|Mm7\|chr2 (49781443-49782088)

	spc (1.13366)
	cbe (0.956938)
	fco (0.943248)
	ebs (0.354904)
	ecc (0.345105)
	fce (0.271592)
	fcc (0.197785)
	fbs (0.175346)
	eye (0.170503)
	eru (0.120048)