Non-Coding RNA Search

Ss1.1-rspc025_i20.5.5

Sequence:


               
               CGGCAGGGAGCAGACGCCGCTGTTCCTGGCTGCCCGAGAAGGGGCGGTGGAGGTGGCCCA
GCTATTGCTGGGGCAGGGAGCCGCCCGAGGGCTGCGGGACCAGGCCGGGCTAACACCGGG
AGACATCGCCCGCCAGCGAAACCACTGGGATCTGCTGACTCTGCTGGAAGGGGCGGGGCC
ACCGGAGGCGCGTCACAAAGCCACGCCGGGCCGCGGGGTCGGAACCTTCCAGCGCGCGCG
GACGGCGTCGGGAAGTGTGCTCCCGCGTGGGGGCGGGGCTCTGCCGCGCTGCCGGACGCT
GTCAGCCGGAGCCTGTCCGCAAGCCCGGACTTTGTCCGTAGACTTGGCCGCGCATGGGGG
CGGGGCCTATTCGCACGGCCGAAGCCTATCGAAAGGAGGAGCAGGAGGAGGCCCGCCCCT
CCGCGGCCGTAGGTTTTCTGCAGGCATGCGCGGGCCCCGACCCCACCCAGCAATAGTGCG
AGGAAGATCCGGGGTCACGGCCGGGAGCGGGGGTGTGGCCTCAGGCGATCACTGGCCCTG
CGATTGGGTGGCCTTAGACGCCTGCGGCCCCGCCTCCAGCACTCCAATCCCGCCTCCTTG
CCTCACTCCGTCCCCGGAGCGGGCATCCCCTCAAGTTGCCTGGGGTCCCCCAGCCCACCA
AGTAATACCCTTAAATGCGGGAGGCGAGGGTCAAAAATGAAAGGCTACGTGGCAGGGAAG
GATTCCAAAAGTGAATACTCATACAGGCAGTCTGGAAGACCTCCAGATTTTAAGCCTCAG
AAGTGAGGGCTTATGAGTGTAGCGTCCCTCCTAAAATAAGTGTTTGCTACACTGTCTCCC
ACGTGGAGAAACTGCAGCCCTGGAAAGAGGGTTTAGGGTGCTGGGATGAAGCAGGCCCAG
TCTCTCTCAGAAAACAAGGGTGAAGTGTTACAGGAGGATGGGGTGGAATGGGAGGAGAAC
CCCTGAACTGGAACCAAGAACTGCAGACAGAATGTAAGATGTTCTTTGCTGTATATATAC
GGTTCCCAAAGGGAGCCTCTATTGCCTGTAGCCCCCACTACCCCCAAATGGCTGACAAAT
ATTTATTGAGCATCTAGTGTGTGCCAGGCACTGTGTTGGTGCTGAAGGAAAGGCCCAGGG
TCACTCCAGCTGATGACTCCTTTCGTTTTCCCCACCTTACCGTACCCCCAAACAAACCAC
CATAGGGATGAAGTGCCACTCTTCTAGCCACCACTATCTCTATTTAAGAACCCCAAATGT
GTCACCCCATAATAAAGCTGATTTGAAGTCTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCAGGGAGCAGACGCCGCTGTTCCTGGCTGCCCGAGAAGGGGCGGTGGAGGTGGCCCA
GCTATTGCTGGGGCAGGGAGCCGCCCGAGGGCTGCGGGACCAGGCCGGGCTAACACCGGG
AGACATCGCCCGCCAGCGAAACCACTGGGATCTGCTGACTCTGCTGGAAGGGGCGGGGCC
ACCGGAGGCGCGTCACAAAGCCACGCCGGGCCGCGGGGTCGGAACCTTCCAGCGCGCGCG
GACGGCGTCGGGAAGTGTGCTCCCGCGTGGGGGCGGGGCTCTGCCGCGCTGCCGGACGCT
GTCAGCCGGAGCCTGTCCGCAAGCCCGGACTTTGTCCGTAGACTTGGCCGCGCATGGGGG
CGGGGCCTATTCGCACGGCCGAAGCCTATCGAAAGGAGGAGCAGGAGGAGGCCCGCCCCT
CCGCGGCCGTAGGTTTTCTGCAGGCATGCGCGGGCCCCGACCCCACCCAGCAATAGTGCG
AGGAAGATCCGGGGTCACGGCCGGGAGCGGGGGTGTGGCCTCAGGCGATCACTGGCCCTG
CGATTGGGTGGCCTTAGACGCCTGCGGCCCCGCCTCCAGCACTCCAATCCCGCCTCCTTG
CCTCACTCCGTCCCCGGAGCGGGCATCCCCTCAAGTTGCCTGGGGTCCCCCAGCCCACCA
AGTAATACCCTTAAATGCGGGAGGCGAGGGTCAAAAATGAAAGGCTACGTGGCAGGGAAG
GATTCCAAAAGTGAATACTCATACAGGCAGTCTGGAAGACCTCCAGATTTTAAGCCTCAG
AAGTGAGGGCTTATGAGTGTAGCGTCCCTCCTAAAATAAGTGTTTGCTACACTGTCTCCC
ACGTGGAGAAACTGCAGCCCTGGAAAGAGGGTTTAGGGTGCTGGGATGAAGCAGGCCCAG
TCTCTCTCAGAAAACAAGGGTGAAGTGTTACAGGAGGATGGGGTGGAATGGGAGGAGAAC
CCCTGAACTGGAACCAAGAACTGCAGACAGAATGTAAGATGTTCTTTGCTGTATATATAC
GGTTCCCAAAGGGAGCCTCTATTGCCTGTAGCCCCCACTACCCCCAAATGGCTGACAAAT
ATTTATTGAGCATCTAGTGTGTGCCAGGCACTGTGTTGGTGCTGAAGGAAAGGCCCAGGG
TCACTCCAGCTGATGACTCCTTTCGTTTTCCCCACCTTACCGTACCCCCAAACAAACCAC
CATAGGGATGAAGTGCCACTCTTCTAGCCACCACTATCTCTATTTAAGAACCCCAAATGT
GTCACCCCATAATAAAGCTGATTTGAAGTCTTAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               312-424, - strand, RNAz p=0.525182
               

               
               585-704, - strand, RNAz p=0.957204

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-424, - strand, RNAz p=0.525182
               

               
               585-704, - strand, RNAz p=0.957204

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1293, gnl|bosTau2|chr23 (23675846-23677118)
               

               
               7-1293, gnl|Hg17|chr6 (32271906-32270598)
               

               
               7-1293, gnl|Mm7|chr17 (32668593-32669718)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1293, gnl|bosTau2|chr23 (23675846-23677118)
               

               
               7-1293, gnl|Hg17|chr6 (32271906-32270598)
               

               
               7-1293, gnl|Mm7|chr17 (32668593-32669718)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	312-424, - strand, RNAz p=0.525182
	585-704, - strand, RNAz p=0.957204

	7-1293, gnl\|bosTau2\|chr23 (23675846-23677118)
	7-1293, gnl\|Hg17\|chr6 (32271906-32270598)
	7-1293, gnl\|Mm7\|chr17 (32668593-32669718)

	isp (0.150376)
	hlv (0.139256)
	che (0.136314)
	cov (0.132153)
	jca (0.11396)
	spc (0.113366)