Non-Coding RNA Search

Ss1.1-rspc025_l17.5

Sequence:


               
               GAAGATTCTGCTGTCTTGGAACAGATGGCAGGCTAGATTCCCACAGTGTTGGCCTGTGTG
CTGCCCCACCCCTTCCCACTCGTGCACATGAGCTATAGCCACAGGCCAGCTGTCATGTGT
GGTCATCGCACCCTTACTGTCCAGGGATCCCATCCCTCTTGCCTATGGGGCTTCCATCTG
GCAGAGAACTTGATCTCTAGACCTGACTGCCATCTATGCCCAGTGTCCCAGGAACAGAAC
AGAGAGAGCAGAAGCCCGTTCACTCCTTGATGGCAGCCTCCAGCATGCGGGCAGTGGGAG
GTGCCAGCTGGGCCTGAGGAGTTGCTGTAGGAGGAGTGGGAGGCCCAGGCAACTCCTAGT
GCTGAAGCTCTCAGTTGGTTCAGTTGAGGGGCTCTGCAACTCTGCCCTTACCTTCTATCC
TGTCTCCTTCCCTTGAGTTGGGTGGGGGAGTGGGGAGGAATCAGTGTTTTAATCAGATTT
TACAAAAAAACGTTTTCTTTGTACAATTACCATCCTATGTAAAGATGAAATTTGTGTTGA
GTTCAAGATTTTCATGGAATAAAGATAACACAGTACTTGAGGCCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATTCTGCTGTCTTGGAACAGATGGCAGGCTAGATTCCCACAGTGTTGGCCTGTGTG
CTGCCCCACCCCTTCCCACTCGTGCACATGAGCTATAGCCACAGGCCAGCTGTCATGTGT
GGTCATCGCACCCTTACTGTCCAGGGATCCCATCCCTCTTGCCTATGGGGCTTCCATCTG
GCAGAGAACTTGATCTCTAGACCTGACTGCCATCTATGCCCAGTGTCCCAGGAACAGAAC
AGAGAGAGCAGAAGCCCGTTCACTCCTTGATGGCAGCCTCCAGCATGCGGGCAGTGGGAG
GTGCCAGCTGGGCCTGAGGAGTTGCTGTAGGAGGAGTGGGAGGCCCAGGCAACTCCTAGT
GCTGAAGCTCTCAGTTGGTTCAGTTGAGGGGCTCTGCAACTCTGCCCTTACCTTCTATCC
TGTCTCCTTCCCTTGAGTTGGGTGGGGGAGTGGGGAGGAATCAGTGTTTTAATCAGATTT
TACAAAAAAACGTTTTCTTTGTACAATTACCATCCTATGTAAAGATGAAATTTGTGTTGA
GTTCAAGATTTTCATGGAATAAAGATAACACAGTACTTGAGGCCATCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-588, gnl|bosTau2|chr7 (7052472-7053049)
               

               
               1-588, gnl|Hg17|chr19 (15219459-15218855)
               

               
               1-588, gnl|Mm7|chr17 (30397435-30396852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr7 (7052472-7053049)
               

               
               1-588, gnl|Hg17|chr19 (15219459-15218855)
               

               
               1-588, gnl|Mm7|chr17 (30397435-30396852)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               hlv (0.278513)
               

               
               gul (0.177588)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               gul (0.177588)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-588, gnl\|bosTau2\|chr7 (7052472-7053049)
	1-588, gnl\|Hg17\|chr19 (15219459-15218855)
	1-588, gnl\|Mm7\|chr17 (30397435-30396852)

	hlv (0.278513)
	gul (0.177588)
	cag (0.151194)
	ute (0.132784)
	eru (0.120048)
	ecc (0.115035)
	spc (0.113366)