Non-Coding RNA Search

Ss1.1-rspc025_n11.5

Sequence:


               
               AAGAATCGTATTTTCGCTTTTCTTTCCTGCCGGCTACTGCACCACCCTTTCCTTCACCCA
CCCGGAACCCTGAGGTGAGAACACCCAAGTCAGCAACTCAGCCACAAGCAACAGAAACTA
ATCTCCAAACTGCTCCTAAACTTTCCACATCAACATCTACAACTGGGACAAGCCATCTTG
TCAAGTGTGCAGAGAAGGAGAAAACTTTCTGTGTGAACGGAGGCGAGTGCTTCATGGTGA
AAGACCTTTCAAACCCCTCAAGATACTTGTGCAAGTGCCCAAATGAGTTTACTGGTGATC
GCTGCCAAAACTACGTAATGGCCAGCTTCTACAGTACGTCCACTCCCTTTCTGTCTCTGC
CTGAGTAGGAGCATGTTCAGTCGGTGCTGCTTTCTTGTTGCTGCATCTTCCCTCAGATTT
CACCTAGAGCTAGATGTGTTTTACCAGGTCTAACATTGACTGCCTCTGCCTGTCGCATGA
GAACATTAACAAAAGCGATTGTATTACTTCCTCTGTTCATGACTAGTTGGCTATGAGATG
CTCATAGGTGTGTGAGGCTCCGATGTTTCTGAAATTGATCTTGAATAATGTGATACAAAA
TGAGAGCCTATATCACACAGTGCAATTATAATAAAGGCATTTAAAAGTCTCACATTTATT
GAGAAAATAAAATCATTCCACTGACCAGTCCATCTTCTTTATAAAATGACCACATCCTGA
AAAGGATGTTTGCTAAGTTGTACACAGTACACACTTGAAATGATGGTAAGTTAATTGTGG
TTCAGAATGTGTCATTTATAAGAAATAAACATCATAAAAAGGGTGCAGATGTTTCTCTTC
ATTAACCAGGTCGCACTTAAGTTTTAAAAAAGCACTGAGTAGGAGAGTTAAAAACCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATCGTATTTTCGCTTTTCTTTCCTGCCGGCTACTGCACCACCCTTTCCTTCACCCA
CCCGGAACCCTGAGGTGAGAACACCCAAGTCAGCAACTCAGCCACAAGCAACAGAAACTA
ATCTCCAAACTGCTCCTAAACTTTCCACATCAACATCTACAACTGGGACAAGCCATCTTG
TCAAGTGTGCAGAGAAGGAGAAAACTTTCTGTGTGAACGGAGGCGAGTGCTTCATGGTGA
AAGACCTTTCAAACCCCTCAAGATACTTGTGCAAGTGCCCAAATGAGTTTACTGGTGATC
GCTGCCAAAACTACGTAATGGCCAGCTTCTACAGTACGTCCACTCCCTTTCTGTCTCTGC
CTGAGTAGGAGCATGTTCAGTCGGTGCTGCTTTCTTGTTGCTGCATCTTCCCTCAGATTT
CACCTAGAGCTAGATGTGTTTTACCAGGTCTAACATTGACTGCCTCTGCCTGTCGCATGA
GAACATTAACAAAAGCGATTGTATTACTTCCTCTGTTCATGACTAGTTGGCTATGAGATG
CTCATAGGTGTGTGAGGCTCCGATGTTTCTGAAATTGATCTTGAATAATGTGATACAAAA
TGAGAGCCTATATCACACAGTGCAATTATAATAAAGGCATTTAAAAGTCTCACATTTATT
GAGAAAATAAAATCATTCCACTGACCAGTCCATCTTCTTTATAAAATGACCACATCCTGA
AAAGGATGTTTGCTAAGTTGTACACAGTACACACTTGAAATGATGGTAAGTTAATTGTGG
TTCAGAATGTGTCATTTATAAGAAATAAACATCATAAAAAGGGTGCAGATGTTTCTCTTC
ATTAACCAGGTCGCACTTAAGTTTTAAAAAAGCACTGAGTAGGAGAGTTAAAAACCTTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9ESA8_RAT

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9ESA8_RAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-144, gnl|bosTau2|chr27 (19923680-19923824)
               

               
               1-144, gnl|Hg17|chr8 (32625301-32625445)
               

               
               1-144, gnl|Mm7|chr8 (30685398-30685254)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr27 (19923680-19923824)
               

               
               1-144, gnl|Hg17|chr8 (32625301-32625445)
               

               
               1-144, gnl|Mm7|chr8 (30685398-30685254)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               spc (0.226732)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               spc (0.226732)

	1-144, gnl\|bosTau2\|chr27 (19923680-19923824)
	1-144, gnl\|Hg17\|chr8 (32625301-32625445)
	1-144, gnl\|Mm7\|chr8 (30685398-30685254)