Non-Coding RNA Search

Ss1.1-rspc025_n24.5

Sequence:


               
               ATTGAGGTTGATGGCAAATCTGGAAAGCTTTGCATGGTGCCTGCTTATTATATCTGGATT
CAGCACCTCATTTTTATGGGAGTTCTAATACCCACAGTTTAAAAAAGTATAAATGAGAAA
AATACTTGAAAGTGTCTTTTTTCTAATAAGAGGAATGCATGTTACGTTTTCGTTTATTGT
AGTGTAATGCCTTTTCCCTTACACCTACTAACTATTCAAATTAATAGTACTTACTTAGTT
TTAGAATGTTAATTTAAGTAGATAAAATTTTTAGTAACTTAAAAGAAACTTGTTTGCTGT
GTCTATACTATTTTGAACATAATTCCATTTCTTGTGTACAGAGAATTACATGTATATTCA
CAATGAAGAAATTGTGTGCACCAGAAATAAACCCCTTTTAAACTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGAGGTTGATGGCAAATCTGGAAAGCTTTGCATGGTGCCTGCTTATTATATCTGGATT
CAGCACCTCATTTTTATGGGAGTTCTAATACCCACAGTTTAAAAAAGTATAAATGAGAAA
AATACTTGAAAGTGTCTTTTTTCTAATAAGAGGAATGCATGTTACGTTTTCGTTTATTGT
AGTGTAATGCCTTTTCCCTTACACCTACTAACTATTCAAATTAATAGTACTTACTTAGTT
TTAGAATGTTAATTTAAGTAGATAAAATTTTTAGTAACTTAAAAGAAACTTGTTTGCTGT
GTCTATACTATTTTGAACATAATTCCATTTCTTGTGTACAGAGAATTACATGTATATTCA
CAATGAAGAAATTGTGTGCACCAGAAATAAACCCCTTTTAAACTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               58-158, + strand, RNAz p=0.577717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-158, + strand, RNAz p=0.577717

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-399, gnl|bosTau2|chr1 (52715048-52715446)
               

               
               1-399, gnl|canFam2|chr34 (17194817-17195236)
               

               
               1-399, gnl|dasNov1|scaffold_2857 (49853-49442)
               

               
               1-399, gnl|echTel1|scaffold_276449 (13345-12945)
               

               
               1-399, gnl|hg17|chr3 (182171900-182172316)
               

               
               1-399, gnl|Hg17|chr3 (182171979-182172383)
               

               
               1-399, gnl|loxAfr1|scaffold_15873 (2790-2399)
               

               
               1-399, gnl|mm7|chr3 (33874061-33874451)
               

               
               1-399, gnl|Mm7|chr3 (33874144-33874515)
               

               
               1-399, gnl|monDom2|scaffold_28 (26457341-26456887)
               

               
               1-399, gnl|oryCun1|scaffold_201706 (54752-54343)
               

               
               1-399, gnl|panTro1|chr2 (185951391-185951807)
               

               
               1-399, gnl|rheMac2|chr2 (105756477-105756065)
               

               
               1-399, gnl|rn3|chr2 (120324380-120324761)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-399, gnl|bosTau2|chr1 (52715048-52715446)
               

               
               1-399, gnl|canFam2|chr34 (17194817-17195236)
               

               
               1-399, gnl|dasNov1|scaffold_2857 (49853-49442)
               

               
               1-399, gnl|echTel1|scaffold_276449 (13345-12945)
               

               
               1-399, gnl|hg17|chr3 (182171900-182172316)
               

               
               1-399, gnl|Hg17|chr3 (182171979-182172383)
               

               
               1-399, gnl|loxAfr1|scaffold_15873 (2790-2399)
               

               
               1-399, gnl|mm7|chr3 (33874061-33874451)
               

               
               1-399, gnl|Mm7|chr3 (33874144-33874515)
               

               
               1-399, gnl|monDom2|scaffold_28 (26457341-26456887)
               

               
               1-399, gnl|oryCun1|scaffold_201706 (54752-54343)
               

               
               1-399, gnl|panTro1|chr2 (185951391-185951807)
               

               
               1-399, gnl|rheMac2|chr2 (105756477-105756065)
               

               
               1-399, gnl|rn3|chr2 (120324380-120324761)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	1-399, gnl\|bosTau2\|chr1 (52715048-52715446)
	1-399, gnl\|canFam2\|chr34 (17194817-17195236)
	1-399, gnl\|dasNov1\|scaffold_2857 (49853-49442)
	1-399, gnl\|echTel1\|scaffold_276449 (13345-12945)
	1-399, gnl\|hg17\|chr3 (182171900-182172316)
	1-399, gnl\|Hg17\|chr3 (182171979-182172383)
	1-399, gnl\|loxAfr1\|scaffold_15873 (2790-2399)
	1-399, gnl\|mm7\|chr3 (33874061-33874451)
	1-399, gnl\|Mm7\|chr3 (33874144-33874515)
	1-399, gnl\|monDom2\|scaffold_28 (26457341-26456887)
	1-399, gnl\|oryCun1\|scaffold_201706 (54752-54343)
	1-399, gnl\|panTro1\|chr2 (185951391-185951807)
	1-399, gnl\|rheMac2\|chr2 (105756477-105756065)
	1-399, gnl\|rn3\|chr2 (120324380-120324761)