Non-Coding RNA Search

Ss1.1-rspc026_b11.5

Sequence:


               
               TCACCAGATCCATTTTAGGTGAGAGGCCCAGAGAAGCCTTACAGCATATACATGGTCGAG
AAGGGGCTGGTGCCTTAAGCTACTTCGCTCTTATTCTACTGCTTTCTAGGAGAAGAGCAG
GCTGAACCGATTTGCAAGTGGATAAAGCCTGTCATTACACTTAAAAGGCAAGAGTAGGGG
ATAGTGCCTATTTTCTCTATCCCAGCTGCCCAAATGATCCTCAAATGGAAACACATTTAA
GATGTAAAAAGCTTCTTTGCAATAAAGACAGTTTGTAAATTTTAAGTAATTTAAATAGCA
GTTAAAATGATAACTAACATATCTGTCTGAGTGGGTAGCATTCTGGGTAGAAAAAAAAAA
TCTAAAACCAAAGCTGACTAGTGAACAATAAACTTATATTTTTTTCTCTTTCTCCCACCA
ATATAGATTCTACTGCATCTGAAATGCATCCATAACAATTTTATTGATGCTTACTGTTCA
ATGGCATCTATAATAAAAATCCTTTAGAGTCAAAATATTTCAGTACAGTTTAAAATTACA
TGTTATCTTGATTTGAAATGTTATAATAGTCTACAAATTATCCTGGTTACATATTTTACA
GCCTGAAATAAAATAACAGACATCATTTTCATTTATTCTATCACAAAACATAATTCCAAA
GTCATGGTTAATTGCCCTAAATTCAGCCTCATCATTTTGGTCAAATAATTTCTAAGGACT
GCTAATTATTTCCTCAATCAAAGGAAACCAGAAGCTGTTTAAGAGTTCATTATTCTTTGG
GTTGGTATCATAAACATAAGTTTATTCAGTTTCCATTCGTTGTCACCCAAACTAAAAATG
TCACCTAACATTACCCGTGTATTCTCTTTGATACTGTGTTGAGAGAAACTTTAAAAAAGC
ATTGGAACTGCTTTTCTGAAAAGTCTGCCACAAAATGTGTACTCTGGTTTTTCTTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCAGATCCATTTTAGGTGAGAGGCCCAGAGAAGCCTTACAGCATATACATGGTCGAG
AAGGGGCTGGTGCCTTAAGCTACTTCGCTCTTATTCTACTGCTTTCTAGGAGAAGAGCAG
GCTGAACCGATTTGCAAGTGGATAAAGCCTGTCATTACACTTAAAAGGCAAGAGTAGGGG
ATAGTGCCTATTTTCTCTATCCCAGCTGCCCAAATGATCCTCAAATGGAAACACATTTAA
GATGTAAAAAGCTTCTTTGCAATAAAGACAGTTTGTAAATTTTAAGTAATTTAAATAGCA
GTTAAAATGATAACTAACATATCTGTCTGAGTGGGTAGCATTCTGGGTAGAAAAAAAAAA
TCTAAAACCAAAGCTGACTAGTGAACAATAAACTTATATTTTTTTCTCTTTCTCCCACCA
ATATAGATTCTACTGCATCTGAAATGCATCCATAACAATTTTATTGATGCTTACTGTTCA
ATGGCATCTATAATAAAAATCCTTTAGAGTCAAAATATTTCAGTACAGTTTAAAATTACA
TGTTATCTTGATTTGAAATGTTATAATAGTCTACAAATTATCCTGGTTACATATTTTACA
GCCTGAAATAAAATAACAGACATCATTTTCATTTATTCTATCACAAAACATAATTCCAAA
GTCATGGTTAATTGCCCTAAATTCAGCCTCATCATTTTGGTCAAATAATTTCTAAGGACT
GCTAATTATTTCCTCAATCAAAGGAAACCAGAAGCTGTTTAAGAGTTCATTATTCTTTGG
GTTGGTATCATAAACATAAGTTTATTCAGTTTCCATTCGTTGTCACCCAAACTAAAAATG
TCACCTAACATTACCCGTGTATTCTCTTTGATACTGTGTTGAGAGAAACTTTAAAAAAGC
ATTGGAACTGCTTTTCTGAAAAGTCTGCCACAAAATGTGTACTCTGGTTTTTCTTTTTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr14 (11590496-11589553)
               

               
               1-960, gnl|Hg17|chr8 (57247744-57248699)
               

               
               1-960, gnl|Mm7|chr4 (3837518-3838574)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr14 (11590496-11589553)
               

               
               1-960, gnl|Hg17|chr8 (57247744-57248699)
               

               
               1-960, gnl|Mm7|chr4 (3837518-3838574)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.157208)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

	1-960, gnl\|bosTau2\|chr14 (11590496-11589553)
	1-960, gnl\|Hg17\|chr8 (57247744-57248699)
	1-960, gnl\|Mm7\|chr4 (3837518-3838574)