Non-Coding RNA Search

Ss1.1-rspc026_h22.5

Sequence:


               
               CCGACTGCTCTTTCTGTAAACGCCCCTCCGGATGCCGGCCACTCTTTGACAGGTGACTGA
CCCTGGGCCAGTGCTCCAGGCATCGTGGCTGTGAGTCCTTCTCTGCCCGTGGATCCATTC
CTGCTGAACAGACACCTTGTCTGAGGCCAACCTCACTCTTGGATCTTTCGGAATCGTTTT
CTACAGCTGACTTGCTCTAGGTGCTTAATCCCTGCCCAGTCCCAAGTACCGTCCTCTCCC
AGAAACCTGTTCCAACAAGGGCTGGCTTTGAGCGTAACTATTACTGCGCCTCTGTGACAA
AACCCACGTCAGACTGGGAGCAGCTGTTCAGCTTTCTGTCTCAAATGGGAGCTAGAATCT
CTTAGCAGAGTGCACTCAGCGCAGGGGAAAGTGAGATGCAGAGAGAAGGCAGACATCACC
GTCTCCAGCTTATTCTTCACCAGCGAGGCTCTGGCCTCACCCTTTGGAGTTATACCTGCA
GTCTGGGGGGCTCCGAAGGGCTTCATATCCGCACAACAAGGAGAGAAGCATCCTTCAGCC
GAGTGGTAACAGCCAGGCAGCCAGAAACCTCTCTGATCAAAGGGAAAAATTTGGGTAGTT
GACACTTTGAAGCTCAGTTGAGTTAGAGGGTTGAGGATGCTTATTTTCCAGTCAGTTTTT
AATTCTAGAGAAGAAATGAAACACATAGCCTTAAACCATTCAAGAGCTTGTAAAAATACA
CAAATACTGAAGCAGGTAAATATTTTCACCTGTTAAGTGCAACAACTTTAAACATTTACT
CTTCATGTGAGTTTCCTAAAGCAAAACTGTAAAAAAAAAAAAAAAAATCTGTATAATTTA
AGAAGGAAAGTGTTTTTCCTCCAAATAAATTTCCTCTTACACATAGTAATGAAAACATTT
AAGTGAATATTGTAAGTATATCTATTATAATTTCTAAAAACAGTAAAATGTTTACTTGAT
GGAATTAAATATGGAAATTTCAGCTCATCAAATTATATACTATTTAATCCTACTGGGGAG
GTGGGGAGTCTTCCACATCAGAAAAGTATTTTAAGGCAAAATGCAATTTACTATGATGAG
CAGACCAGCACTTTATAAGAGACCAGTCTAGTTCTTTCCAGTATTTCCATATCATTTTAT
ATTTCTGGGGACTTCCTTATTTGAAAAATAAGGATATCACTTTTTTGGTTTTTCTTGAAA
AGTACTTATGTCTTAAGAACATAGTATCATGATTGGGGCGGCCAGGGAGGCAGGAGAAGC
CATTTTTCTTTGTAGATAAAAAGCATTCTGTATGATTGTTGTATAATAAATTGATTTTTA
CACTAAAAAAAATTGTGATTCTTTTCATTTGATTCAAAGAAGTTAAAATGTGTTCTGCAT
GCTATTCCAAATGACCTGTTACTCAGGAATTTTTTAATAAAGTATTATTTTAGCAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGACTGCTCTTTCTGTAAACGCCCCTCCGGATGCCGGCCACTCTTTGACAGGTGACTGA
CCCTGGGCCAGTGCTCCAGGCATCGTGGCTGTGAGTCCTTCTCTGCCCGTGGATCCATTC
CTGCTGAACAGACACCTTGTCTGAGGCCAACCTCACTCTTGGATCTTTCGGAATCGTTTT
CTACAGCTGACTTGCTCTAGGTGCTTAATCCCTGCCCAGTCCCAAGTACCGTCCTCTCCC
AGAAACCTGTTCCAACAAGGGCTGGCTTTGAGCGTAACTATTACTGCGCCTCTGTGACAA
AACCCACGTCAGACTGGGAGCAGCTGTTCAGCTTTCTGTCTCAAATGGGAGCTAGAATCT
CTTAGCAGAGTGCACTCAGCGCAGGGGAAAGTGAGATGCAGAGAGAAGGCAGACATCACC
GTCTCCAGCTTATTCTTCACCAGCGAGGCTCTGGCCTCACCCTTTGGAGTTATACCTGCA
GTCTGGGGGGCTCCGAAGGGCTTCATATCCGCACAACAAGGAGAGAAGCATCCTTCAGCC
GAGTGGTAACAGCCAGGCAGCCAGAAACCTCTCTGATCAAAGGGAAAAATTTGGGTAGTT
GACACTTTGAAGCTCAGTTGAGTTAGAGGGTTGAGGATGCTTATTTTCCAGTCAGTTTTT
AATTCTAGAGAAGAAATGAAACACATAGCCTTAAACCATTCAAGAGCTTGTAAAAATACA
CAAATACTGAAGCAGGTAAATATTTTCACCTGTTAAGTGCAACAACTTTAAACATTTACT
CTTCATGTGAGTTTCCTAAAGCAAAACTGTAAAAAAAAAAAAAAAAATCTGTATAATTTA
AGAAGGAAAGTGTTTTTCCTCCAAATAAATTTCCTCTTACACATAGTAATGAAAACATTT
AAGTGAATATTGTAAGTATATCTATTATAATTTCTAAAAACAGTAAAATGTTTACTTGAT
GGAATTAAATATGGAAATTTCAGCTCATCAAATTATATACTATTTAATCCTACTGGGGAG
GTGGGGAGTCTTCCACATCAGAAAAGTATTTTAAGGCAAAATGCAATTTACTATGATGAG
CAGACCAGCACTTTATAAGAGACCAGTCTAGTTCTTTCCAGTATTTCCATATCATTTTAT
ATTTCTGGGGACTTCCTTATTTGAAAAATAAGGATATCACTTTTTTGGTTTTTCTTGAAA
AGTACTTATGTCTTAAGAACATAGTATCATGATTGGGGCGGCCAGGGAGGCAGGAGAAGC
CATTTTTCTTTGTAGATAAAAAGCATTCTGTATGATTGTTGTATAATAAATTGATTTTTA
CACTAAAAAAAATTGTGATTCTTTTCATTTGATTCAAAGAAGTTAAAATGTGTTCTGCAT
GCTATTCCAAATGACCTGTTACTCAGGAATTTTTTAATAAAGTATTATTTTAGCAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               719-1436, gnl|bosTau2|chr23 (34797480-34798218)
               

               
               719-1436, gnl|Hg17|chr6 (11089628-11088866)
               

               
               719-1436, gnl|Mm7|chr13 (40622165-40621491)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               719-1436, gnl|bosTau2|chr23 (34797480-34798218)
               

               
               719-1436, gnl|Hg17|chr6 (11089628-11088866)
               

               
               719-1436, gnl|Mm7|chr13 (40622165-40621491)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               spc (1.58712)
               

               
               cte (0.58548)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.58712)
               

               
               cte (0.58548)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

	719-1436, gnl\|bosTau2\|chr23 (34797480-34798218)
	719-1436, gnl\|Hg17\|chr6 (11089628-11088866)
	719-1436, gnl\|Mm7\|chr13 (40622165-40621491)

	spc (1.58712)
	cte (0.58548)
	fco (0.314416)
	cbe (0.239234)
	tes (0.207814)
	fcc (0.197785)
	fhi (0.169578)
	ret (0.128733)
	ebs (0.118301)