Non-Coding RNA Search

Ss1.1-rspc026_o15.5

Sequence:


               
               TGCTGTCACTTCATATCAAGCATGATAATGATTTCTTCATTAAATTGTATACAACTCCAT
TGTTTTGAGATCCGAGTTTCATTTCAGAATCTATGTTTTGATCCTTATTGGTTTGTTTTG
TTACTGTTTTTTTGCTTTTTAATTAAAGCACATCAATATTAAAGTGTTAACTGTATGTCA
AAAATGATATGGAACTCCTTTTGGCAAATATTTATTTAAAATTTACATCAGCTTAAAACC
TTTTGTCCACCTTGCTTTTTGGGGGGCTTACTGCTTCCTTTTTAATCCATGAAAAAGATA
TTTTCTGTTGAATAAGAGTACTCCAACTGTATTTATGAGTGATGTGCTTGAAGGGAGCAT
AATAGGGCAGAATACAATTATAATGGAACATTCTCATTCTTAGAGCCATGCATTGACTAT
TAAATACATTTTTATATCAGCAGAATGAGAATTTAAACTCTCAACTAGTTTAACTATTAA
AACATGGTATCGTTGAGCAATTTGGGGGGGGTAGCTTTTTGTTCTATCTTGTACAGAAAA
CAAGAATAGAGTCATTTAATATGTTTCAGAACTGTATAAATATATCTGTAACATTAATAC
TTTCTTTTAAGGCAAATATAAATTCAAAAGGGGAGATTTTATGGAGGGAAACAGTTCTAA
TTAAGATGGTTTTCCTTCACTCTAATATTTAGATTAGAAACTCACTGTAAAATAATGCCA
GCCTCTATAATGCTGTAATAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGTCACTTCATATCAAGCATGATAATGATTTCTTCATTAAATTGTATACAACTCCAT
TGTTTTGAGATCCGAGTTTCATTTCAGAATCTATGTTTTGATCCTTATTGGTTTGTTTTG
TTACTGTTTTTTTGCTTTTTAATTAAAGCACATCAATATTAAAGTGTTAACTGTATGTCA
AAAATGATATGGAACTCCTTTTGGCAAATATTTATTTAAAATTTACATCAGCTTAAAACC
TTTTGTCCACCTTGCTTTTTGGGGGGCTTACTGCTTCCTTTTTAATCCATGAAAAAGATA
TTTTCTGTTGAATAAGAGTACTCCAACTGTATTTATGAGTGATGTGCTTGAAGGGAGCAT
AATAGGGCAGAATACAATTATAATGGAACATTCTCATTCTTAGAGCCATGCATTGACTAT
TAAATACATTTTTATATCAGCAGAATGAGAATTTAAACTCTCAACTAGTTTAACTATTAA
AACATGGTATCGTTGAGCAATTTGGGGGGGGTAGCTTTTTGTTCTATCTTGTACAGAAAA
CAAGAATAGAGTCATTTAATATGTTTCAGAACTGTATAAATATATCTGTAACATTAATAC
TTTCTTTTAAGGCAAATATAAATTCAAAAGGGGAGATTTTATGGAGGGAAACAGTTCTAA
TTAAGATGGTTTTCCTTCACTCTAATATTTAGATTAGAAACTCACTGTAAAATAATGCCA
GCCTCTATAATGCTGTAATAAATT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-332, gnl|bosTau2|chr12 (4684011-4684339)
               

               
               1-332, gnl|Hg17|chr13 (40847955-40848574)
               


               
               517-685, gnl|bosTau2|chr1 (42823331-42823500)
               

               
               517-685, gnl|Hg17|chr13 (40848920-40849072)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-332, gnl|bosTau2|chr12 (4684011-4684339)
               

               
               1-332, gnl|Hg17|chr13 (40847955-40848574)
               


               
               517-685, gnl|bosTau2|chr1 (42823331-42823500)
               

               
               517-685, gnl|Hg17|chr13 (40848920-40849072)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	1-332, gnl\|bosTau2\|chr12 (4684011-4684339)
	1-332, gnl\|Hg17\|chr13 (40847955-40848574)

	517-685, gnl\|bosTau2\|chr1 (42823331-42823500)
	517-685, gnl\|Hg17\|chr13 (40848920-40849072)