Ss1.1-rspc027_e12.5
|
TAGGAGAAGCCAGTCACCAACAGAAGGCATCTCACCTTGGATGATTCTGCATGTGGAAAC
TTCTTTCATCTTGATTTAAAAAAGGTCCATCTCCAGCCACCCAGCCCCAAGATGGTGCCA
ACGCTGCTGCTGCTTCCCGCCCTGGCTGGCCTCCTTGGAGTGGCTGAGGGACAAGCCTTC
CACCTCGGGAAATGCCCGAATCCTCCAGTGCAGGAGAATTTTGACGTCAATAAGTATCTT
GGAAGATGGTATGAAATTGAGAAGATCCCAGTGAGCTTTGAGAAGGGAAGTTGCATCCAA
GCCAACTACTCACTAAAGGAAAACGGAAACATCAAAGTGATAAACAAGGAGTTGAGAGCT
GACGGAACTGTGAATCAAATTGAAGGTGAAGCCACCCCAGATAACATCACTGAGCCTGCC
AAGTTGGGAGTTAAGTTTTTCTGGTTGATGCCATCAGCTCCATACTGGGTCCTGGCCACC
GACTATGAGAACTACGCCCTTGTGTACTCCTGTACCACAATCATCTGGCTTTTTCACCTG
GATCATGTTTGGATCTTGGGAAGAAACCCTTATCTCCCTCCAGAAACAGTGACCTATCTC
AAAGATATCCTGACCTCTAATGACATTGACATTGAGAAAATGACTATCACAGATCAGGTG
AACTGCCCCGAGTACCTGCAATGAGGCTTTAAAGGGAGGCTCCATGTTCTTTCTTTTGCT
TTGCGTCCCCCCACCCCGCCCCCGCCCCCAGCCACCCCTCACAAGGACACACCAACCCAC
CACGACAGATCTCTGCAAATACCAGAAGGGAAATGTGACAGCAGAAGCTAGTGGTGAGGA
ATTCAAGGCAAGTTGACCCAAACACTTAGCCGTGCACCACCGTGTTACTTTGCAAGCCTG
ATAATAAAATTGCTGCCGACCTGCTGTTCTCACAGTAGATTCCAAATTGGACTAATTATT
ATGGGGTTTTAATTATAAGCTTTTGTTTGAAAATCCTTAAGCAGTTGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TAGGAGAAGCCAGTCACCAACAGAAGGCATCTCACCTTGGATGATTCTGCATGTGGAAAC
TTCTTTCATCTTGATTTAAAAAAGGTCCATCTCCAGCCACCCAGCCCCAAGATGGTGCCA
ACGCTGCTGCTGCTTCCCGCCCTGGCTGGCCTCCTTGGAGTGGCTGAGGGACAAGCCTTC
CACCTCGGGAAATGCCCGAATCCTCCAGTGCAGGAGAATTTTGACGTCAATAAGTATCTT
GGAAGATGGTATGAAATTGAGAAGATCCCAGTGAGCTTTGAGAAGGGAAGTTGCATCCAA
GCCAACTACTCACTAAAGGAAAACGGAAACATCAAAGTGATAAACAAGGAGTTGAGAGCT
GACGGAACTGTGAATCAAATTGAAGGTGAAGCCACCCCAGATAACATCACTGAGCCTGCC
AAGTTGGGAGTTAAGTTTTTCTGGTTGATGCCATCAGCTCCATACTGGGTCCTGGCCACC
GACTATGAGAACTACGCCCTTGTGTACTCCTGTACCACAATCATCTGGCTTTTTCACCTG
GATCATGTTTGGATCTTGGGAAGAAACCCTTATCTCCCTCCAGAAACAGTGACCTATCTC
AAAGATATCCTGACCTCTAATGACATTGACATTGAGAAAATGACTATCACAGATCAGGTG
AACTGCCCCGAGTACCTGCAATGAGGCTTTAAAGGGAGGCTCCATGTTCTTTCTTTTGCT
TTGCGTCCCCCCACCCCGCCCCCGCCCCCAGCCACCCCTCACAAGGACACACCAACCCAC
CACGACAGATCTCTGCAAATACCAGAAGGGAAATGTGACAGCAGAAGCTAGTGGTGAGGA
ATTCAAGGCAAGTTGACCCAAACACTTAGCCGTGCACCACCGTGTTACTTTGCAAGCCTG
ATAATAAAATTGCTGCCGACCTGCTGTTCTCACAGTAGATTCCAAATTGGACTAATTATT
ATGGGGTTTTAATTATAAGCTTTTGTTTGAAAATCCTTAAGCAGTTGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
83-234, gnl|bosTau2|chr1 (43509977-43510128) |
|
83-234, gnl|canFam2|chr33 (33533099-33532919) |
|
83-234, gnl|dasNov1|scaffold_10237 (42226-42093) |
|
83-234, gnl|echTel1|scaffold_321331 (2489-2351) |
|
83-234, gnl|hg17|chr3_random (539754-539886) |
|
83-234, gnl|Hg17|chr3_random (539933-539781) |
|
83-234, gnl|loxAfr1|scaffold_23663 (39995-39855) |
|
83-234, gnl|mm7|chr16 (30985413-30985548) |
|
83-234, gnl|Mm7|chr16 (30985590-30985443) |
|
83-234, gnl|panTro1|chr2 (200896649-200896781) |
|
83-234, gnl|rheMac2|chr2 (187768643-187768775) |
|
83-234, gnl|rn3|chr11_random (907799-907664) |
|
83-234, gnl|tetNig1|chr15_random (2953265-2953146) |
| |
|
439-1005, gnl|bosTau2|chr1 (44623111-44622550) |
|
439-1005, gnl|Hg17|chr3_random (529584-528857) |
|
439-1005, gnl|Mm7|chr16 (30972012-30971468) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
83-234, gnl|bosTau2|chr1 (43509977-43510128) |
|
83-234, gnl|canFam2|chr33 (33533099-33532919) |
|
83-234, gnl|dasNov1|scaffold_10237 (42226-42093) |
|
83-234, gnl|echTel1|scaffold_321331 (2489-2351) |
|
83-234, gnl|hg17|chr3_random (539754-539886) |
|
83-234, gnl|Hg17|chr3_random (539933-539781) |
|
83-234, gnl|loxAfr1|scaffold_23663 (39995-39855) |
|
83-234, gnl|mm7|chr16 (30985413-30985548) |
|
83-234, gnl|Mm7|chr16 (30985590-30985443) |
|
83-234, gnl|panTro1|chr2 (200896649-200896781) |
|
83-234, gnl|rheMac2|chr2 (187768643-187768775) |
|
83-234, gnl|rn3|chr11_random (907799-907664) |
|
83-234, gnl|tetNig1|chr15_random (2953265-2953146) |
| |
|
439-1005, gnl|bosTau2|chr1 (44623111-44622550) |
|
439-1005, gnl|Hg17|chr3_random (529584-528857) |
|
439-1005, gnl|Mm7|chr16 (30972012-30971468) |
|
hyp (1.71404) |
|
fbs (1.40277) |
|
cov (0.792917) |
|
cbr (0.767853) |
|
spc (0.566829) |
|
nmm (0.531209) |
|
ute (0.531138) |
|
ton (0.526501) |
|
ret (0.514933) |
|
bla (0.497389) |
|
fat (0.442282) |
|
mas (0.42061) |
|
nep (0.36785) |
|
gul (0.355177) |
|
cut (0.339847) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
tbr (0.308356) |
|
nca (0.273748) |
|
ova (0.258264) |
|
tra (0.246184) |
|
ece (0.229305) |
|
sto (0.179824) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
fco (0.157208) |
|
cag (0.151194) |
|
ski (0.146735) |
|
sug (0.127291) |
|
cly (0.120642) |
|
med (0.116252) |
|
eje (0.0988338) |
|
hyp (1.71404) |
|
fbs (1.40277) |
|
cov (0.792917) |
|
cbr (0.767853) |
|
spc (0.566829) |
|
nmm (0.531209) |
|
ute (0.531138) |
|
ton (0.526501) |
|
ret (0.514933) |
|
bla (0.497389) |
|
fat (0.442282) |
|
mas (0.42061) |
|
nep (0.36785) |
|
gul (0.355177) |
|
cut (0.339847) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
tbr (0.308356) |
|
nca (0.273748) |
|
ova (0.258264) |
|
tra (0.246184) |
|
ece (0.229305) |
|
sto (0.179824) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
fco (0.157208) |
|
cag (0.151194) |
|
ski (0.146735) |
|
sug (0.127291) |
|
cly (0.120642) |
|
med (0.116252) |
|
eje (0.0988338) |
