Ss1.1-rspc028_j14.5.5
|
GGGAGGCGGCTGGCTGGTGGGATGGCAGATGAGGAGGAAGACCCCACCTTTGAGGAAGAA
AGTGAAGAAATTGGAGGAGGTGCCGAAGGTGGACAGGGTAAAAGAAAGAGACTTTTTTCT
AAAGAATTACGGTGTATGATGTATGGGTTTGGGGATGACCAGAATCCTTATACCGAGTCG
GTGGATATTCTTGAAGATCTTGTCATAGAGTTCATCACTGAGATGACTCACAAGGCAATG
TCAATTGGAAGACAAGGTCGGGTACAAGTTGAAGATATCGTCTTTTTGATTCGAAAGGAC
CCAAGAAAGTTTGCTAGGGTTAAAGACTTGCTTACTATGAATGAAGAATTGAAACGAGCT
AGAAAAGCATTTGATGAAGCAAACTATGGATCTTGACACCTTTTGTACTTTCTGAAGCTT
CCTTATCTCCTGGGAAAATCATATTTAATAACCATATTTTCCATAATAAGGTCTTGATGC
TTAGCCACGTGAATGAAAAATGGAGACACAGTTTTCTGTCTTTGTTTTCATGTCTTCAAT
TTTAGAGTGATATTTGAGTCTTTGACTGCTCTTATATTACCATACTTGGATTACTTAATT
TGATTTTAGTGACCTCGGTTAAGTCAAAGTACCTTGCAAACGTTTCAGTTCCTTCTAGCT
TTTGATCATCTAAATGATGAAGGAGTATTTATATATTAGGTATATTTGTGCCACTGTAGG
CTGTGCTATAACAGTTTAATATGTGAACTCTAAATGGCACCTTTGATTTTATGATAGCTA
AGACATATCTTTCATGTATTCTAAAGATTTTAGACTACAGTAGTCTGAAAAGTTATTAAA
AGATGGTGAACTGATTTGTATTTCTTTTTTGTTGTTGATTTTTAGGGCCACAGTATGGAA
GTTCCCAGGCTAGGGGTCACATCGGAGCTGTAGCTGCTGGCCTACACCACAGCCACAGCA
ATGTGGTAGTGTGGGATCCTTAAACCACCAAGTGAGGCCGGGGATCGAACCCACATCCTC
ATGGATACTAGATGGGCTTGTTACTGCGGAGCCACAACAGGAACTTCCTGGTTTGTGTTT
CTTTTAAGGAGAAAATGAAATATGAGAAAATACAGCCTTTTGTAAGAGTGTTTATTTGTC
TGAAGATTTTTTAATACTTTTGTTTAGATAAGAGCGATTTTTTATTTTTATTTTTTGAGA
AACTAAAAGTTTCATGTGAATGCATGTTGGAAGGCTTATTTGATTTAAAACTTTTTGGGC
TTATAGTATACTATTTGTCAAGTTTTAAGAGAACTCATTTTCCTAGGTCAGATTATATCT
TCTAAAAATAAGTGCTTTCAGTAGCAGGAATGGCACTGCTGAAAAAGCTGATGGCAGGAT
AAGCATTTAGGGTAGTGTTTTATTAACATATTTGTTAGTACTTGTTCATTGTGAAAATGT
GTACTTGACTAAAACCATATGTGGCTGTGGAAACCACTTCTGTAGTTCAGGATATACAGG
TTTTGTGTGTATTTAGCCTATTATACTGCATTTAGCTTAAAGTAAGGATTAAAATTGCAT
TTAAAAGGATCATTGAATATTACTCTTTGTATAACTTAATGTTTTGTGTGCCACTTGTAA
AACATTATCTATGAATCAGTACTTAGGAAAATTTTACTTTCATAACCTATCAATATAAGG
AATAAAGTATAAAACATTTAAAAGATTAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAGGCGGCTGGCTGGTGGGATGGCAGATGAGGAGGAAGACCCCACCTTTGAGGAAGAA
AGTGAAGAAATTGGAGGAGGTGCCGAAGGTGGACAGGGTAAAAGAAAGAGACTTTTTTCT
AAAGAATTACGGTGTATGATGTATGGGTTTGGGGATGACCAGAATCCTTATACCGAGTCG
GTGGATATTCTTGAAGATCTTGTCATAGAGTTCATCACTGAGATGACTCACAAGGCAATG
TCAATTGGAAGACAAGGTCGGGTACAAGTTGAAGATATCGTCTTTTTGATTCGAAAGGAC
CCAAGAAAGTTTGCTAGGGTTAAAGACTTGCTTACTATGAATGAAGAATTGAAACGAGCT
AGAAAAGCATTTGATGAAGCAAACTATGGATCTTGACACCTTTTGTACTTTCTGAAGCTT
CCTTATCTCCTGGGAAAATCATATTTAATAACCATATTTTCCATAATAAGGTCTTGATGC
TTAGCCACGTGAATGAAAAATGGAGACACAGTTTTCTGTCTTTGTTTTCATGTCTTCAAT
TTTAGAGTGATATTTGAGTCTTTGACTGCTCTTATATTACCATACTTGGATTACTTAATT
TGATTTTAGTGACCTCGGTTAAGTCAAAGTACCTTGCAAACGTTTCAGTTCCTTCTAGCT
TTTGATCATCTAAATGATGAAGGAGTATTTATATATTAGGTATATTTGTGCCACTGTAGG
CTGTGCTATAACAGTTTAATATGTGAACTCTAAATGGCACCTTTGATTTTATGATAGCTA
AGACATATCTTTCATGTATTCTAAAGATTTTAGACTACAGTAGTCTGAAAAGTTATTAAA
AGATGGTGAACTGATTTGTATTTCTTTTTTGTTGTTGATTTTTAGGGCCACAGTATGGAA
GTTCCCAGGCTAGGGGTCACATCGGAGCTGTAGCTGCTGGCCTACACCACAGCCACAGCA
ATGTGGTAGTGTGGGATCCTTAAACCACCAAGTGAGGCCGGGGATCGAACCCACATCCTC
ATGGATACTAGATGGGCTTGTTACTGCGGAGCCACAACAGGAACTTCCTGGTTTGTGTTT
CTTTTAAGGAGAAAATGAAATATGAGAAAATACAGCCTTTTGTAAGAGTGTTTATTTGTC
TGAAGATTTTTTAATACTTTTGTTTAGATAAGAGCGATTTTTTATTTTTATTTTTTGAGA
AACTAAAAGTTTCATGTGAATGCATGTTGGAAGGCTTATTTGATTTAAAACTTTTTGGGC
TTATAGTATACTATTTGTCAAGTTTTAAGAGAACTCATTTTCCTAGGTCAGATTATATCT
TCTAAAAATAAGTGCTTTCAGTAGCAGGAATGGCACTGCTGAAAAAGCTGATGGCAGGAT
AAGCATTTAGGGTAGTGTTTTATTAACATATTTGTTAGTACTTGTTCATTGTGAAAATGT
GTACTTGACTAAAACCATATGTGGCTGTGGAAACCACTTCTGTAGTTCAGGATATACAGG
TTTTGTGTGTATTTAGCCTATTATACTGCATTTAGCTTAAAGTAAGGATTAAAATTGCAT
TTAAAAGGATCATTGAATATTACTCTTTGTATAACTTAATGTTTTGTGTGCCACTTGTAA
AACATTATCTATGAATCAGTACTTAGGAAAATTTTACTTTCATAACCTATCAATATAAGG
AATAAAGTATAAAACATTTAAAAGATTAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
33-353, gnl|bosTau2|chr11 (7972093-7971781) |
|
33-353, gnl|Hg17|chr2 (74489858-74490180) |
|
33-353, gnl|Mm7|chr11 (53157451-53157772) |
| |
|
695-868, gnl|bosTau2|chr11 (7971507-7971338) |
|
695-868, gnl|canFam2|chr17 (51835056-51834644) |
|
695-868, gnl|dasNov1|scaffold_16646 (1085-1410) |
|
695-868, gnl|echTel1|scaffold_152680 (832-559) |
|
695-868, gnl|hg17|chr2 (74490329-74490644) |
|
695-868, gnl|Hg17|chr2 (74490462-74490650) |
|
695-868, gnl|loxAfr1|scaffold_24316 (1196-882) |
|
695-868, gnl|mm7|chr11 (53157916-53158209) |
|
695-868, gnl|Mm7|chr11 (53158038-53158215) |
|
695-868, gnl|monDom2|scaffold_0 (7655128-7655482) |
|
695-868, gnl|oryCun1|scaffold_200457 (144303-143979) |
|
695-868, gnl|panTro1|chr12 (76893181-76893500) |
|
695-868, gnl|rheMac2|chr13 (74579802-74580124) |
|
695-868, gnl|rn3|chr8 (128696037-128695738) |
| |
|
1068-1716, gnl|bosTau2|chr19 (14611365-14612022) |
|
1068-1716, gnl|Hg17|chr6 (88191761-88191128) |
| |
|
1119-1710, gnl|bosTau2|chr11 (7971324-7970715) |
|
1119-1710, gnl|Hg17|chr2 (74490672-74492227) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
33-353, gnl|bosTau2|chr11 (7972093-7971781) |
|
33-353, gnl|Hg17|chr2 (74489858-74490180) |
|
33-353, gnl|Mm7|chr11 (53157451-53157772) |
| |
|
695-868, gnl|bosTau2|chr11 (7971507-7971338) |
|
695-868, gnl|canFam2|chr17 (51835056-51834644) |
|
695-868, gnl|dasNov1|scaffold_16646 (1085-1410) |
|
695-868, gnl|echTel1|scaffold_152680 (832-559) |
|
695-868, gnl|hg17|chr2 (74490329-74490644) |
|
695-868, gnl|Hg17|chr2 (74490462-74490650) |
|
695-868, gnl|loxAfr1|scaffold_24316 (1196-882) |
|
695-868, gnl|mm7|chr11 (53157916-53158209) |
|
695-868, gnl|Mm7|chr11 (53158038-53158215) |
|
695-868, gnl|monDom2|scaffold_0 (7655128-7655482) |
|
695-868, gnl|oryCun1|scaffold_200457 (144303-143979) |
|
695-868, gnl|panTro1|chr12 (76893181-76893500) |
|
695-868, gnl|rheMac2|chr13 (74579802-74580124) |
|
695-868, gnl|rn3|chr8 (128696037-128695738) |
| |
|
1068-1716, gnl|bosTau2|chr19 (14611365-14612022) |
|
1068-1716, gnl|Hg17|chr6 (88191761-88191128) |
| |
|
1119-1710, gnl|bosTau2|chr11 (7971324-7970715) |
|
1119-1710, gnl|Hg17|chr2 (74490672-74492227) |
|
mga (1.12144) |
|
ret (0.7724) |
|
ece (0.45861) |
|
mgm (0.360685) |
|
fbs (0.350693) |
|
spc (0.340097) |
|
liv (0.292569) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
cty (0.20816) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
csk (0.140746) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
mga (1.12144) |
|
ret (0.7724) |
|
ece (0.45861) |
|
mgm (0.360685) |
|
fbs (0.350693) |
|
spc (0.340097) |
|
liv (0.292569) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
cty (0.20816) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
csk (0.140746) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
pgl (0.118483) |
