Ss1.1-rspc029_e19.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACATATATTGTGCTGGACAGTATGTTGCAGCAAATTCAACACGAAGGAACTGTCAACA TATTTGGCTTTTTAAAACACATTCGGTCACAAAGAAATTACTTGGTGCAAACTGAGGAAC AGTATGTTTTCATTCATGATGCACTGGTCGAGGCCATCCTTAGCAAAGAAACCGAGGTCC CGGAGAGCCACATCCACGCCTATGTTAATGGGCTCCTCATTCCTGGACCAACAGGCAAAA CCAAGCTAGAGAAACAGTTCAAGCTCCTGAGTCAATCAAATATACAGCAGAGTGACTATT CAACAGCCCTAAAGCAGTGCAACAGGGAGAAGAACAGAACATCTTCCATCATCCCTGTTG AAAGATCCAGGGTGGGCCTTTCATCCCTGAGTGGGGAAAGCACAGACTACATCAATGCCT CCTACATCATGGGTTATTATCAGAGCAATGAATTCATCATCACCCAGCATCCTCTTCTCC ATACCATCAAGGATTTCTGGAGGATGATATGGGACCATAATGCCCAGCTGGTTGTTATGC TTCCAGATGGTCAAAACATGGCAGAAGATGAATTTGTTTACTGGCCAAATAAAGATGAGC CCATAAATTGTGAGAGTTTTAAGGTCACTCTTATGTCTGAAGAACACAAATGTCTGTCTA ATGAAGAAAAACTTATAATGCAAGATTTTATCTTAGAAGCTACACAGGATGATTATGTAC TTGAAGTGAGGCATTTTCAATGTCCCAAATGGCCAAATCCAGATAGCCCCATAAGTAAAA CTTTTGAACTTATAAGTATTATCAAAGAAGAAGCTGCCACCAGGGATGGGTCCATGATTG TTCATGATGAGCATGGAGGAGTGACAGCAGGAACTTTCTGTGCTCTGACAACCCTTATGC ACCAACTAGAAAAAGAAAATTCCATGGATGTTTATCAGGTAGCCAAGATGATCAATTTGA TGAGGCCAGGAGTCTTTGCTGACATTGAGCAGTATCAGTTTCTCTACAAAGCCATCCTCA GCCTTGTGAGCACGAGGCAGGAAGAGAACCCGTCCACCTCTCTGGACAGCAATGGCGCAG CTTTGCCTGATGGAAACATAGCTGAGAGCTTGGAGTCTTTAGTTTAACATGGAAGGGGGT GAGGGGAGTCACATCTGAGTGTTGTTTTCCTCTTTCTAATATTAGACAGGAAAATCAGTT CCTCTGTTATCTGTTTACCTCCCATCACCTGACAGTAACTTTCATGACATAGGATTCTGC TGCCAAATTTACATCATTAACAATGTGTGCCTTTTTGCAAAACTTCTTATAATTCACTTA TTGTGTTGAAACTAAAATGATTGAAATTTACAGTATTTCTAAGAATGAAATTGTGGTATC TTTTTTTCATATTGATTTTAACAGAAAATTTCAATTTCTAGACATTAGAAATTCCCAACT ACAGAAAACATGTTTGTTTTTAGTGTCAAATTTTTAGCTGCGTTTGTAGCAATCATCAGG TTTGCTAGAAAGGTAACTTTTAATATAGTATCCTGTAAATAAAATACTGTGTTCCCTCTG ATATTCAAATTTTACAACTGCAGTATTCATCTAAAGTAGAAATAATCTGATACTTACTGT AAATACTGCTCTAGCATCTCCATGGACCAAATTTATATTTATAATTGTAGATTTTTATAT TTTACTACTGAGTCAGTTTTCTAGTTCTGTGTAATTGTTTAGTTTAATGATGCAGTTTGT TATCTGGTCTTACTCTGCAAGTCTTCTGATATTGTTTTGTGTTAAGTCATTAACTGTTTC AGCATGTAATTAATTTTAACTTTTATGGAAAATAAAAATACATTTGTTTTGAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACATATATTGTGCTGGACAGTATGTTGCAGCAAATTCAACACGAAGGAACTGTCAACA TATTTGGCTTTTTAAAACACATTCGGTCACAAAGAAATTACTTGGTGCAAACTGAGGAAC AGTATGTTTTCATTCATGATGCACTGGTCGAGGCCATCCTTAGCAAAGAAACCGAGGTCC CGGAGAGCCACATCCACGCCTATGTTAATGGGCTCCTCATTCCTGGACCAACAGGCAAAA CCAAGCTAGAGAAACAGTTCAAGCTCCTGAGTCAATCAAATATACAGCAGAGTGACTATT CAACAGCCCTAAAGCAGTGCAACAGGGAGAAGAACAGAACATCTTCCATCATCCCTGTTG AAAGATCCAGGGTGGGCCTTTCATCCCTGAGTGGGGAAAGCACAGACTACATCAATGCCT CCTACATCATGGGTTATTATCAGAGCAATGAATTCATCATCACCCAGCATCCTCTTCTCC ATACCATCAAGGATTTCTGGAGGATGATATGGGACCATAATGCCCAGCTGGTTGTTATGC TTCCAGATGGTCAAAACATGGCAGAAGATGAATTTGTTTACTGGCCAAATAAAGATGAGC CCATAAATTGTGAGAGTTTTAAGGTCACTCTTATGTCTGAAGAACACAAATGTCTGTCTA ATGAAGAAAAACTTATAATGCAAGATTTTATCTTAGAAGCTACACAGGATGATTATGTAC TTGAAGTGAGGCATTTTCAATGTCCCAAATGGCCAAATCCAGATAGCCCCATAAGTAAAA CTTTTGAACTTATAAGTATTATCAAAGAAGAAGCTGCCACCAGGGATGGGTCCATGATTG TTCATGATGAGCATGGAGGAGTGACAGCAGGAACTTTCTGTGCTCTGACAACCCTTATGC ACCAACTAGAAAAAGAAAATTCCATGGATGTTTATCAGGTAGCCAAGATGATCAATTTGA TGAGGCCAGGAGTCTTTGCTGACATTGAGCAGTATCAGTTTCTCTACAAAGCCATCCTCA GCCTTGTGAGCACGAGGCAGGAAGAGAACCCGTCCACCTCTCTGGACAGCAATGGCGCAG CTTTGCCTGATGGAAACATAGCTGAGAGCTTGGAGTCTTTAGTTTAACATGGAAGGGGGT GAGGGGAGTCACATCTGAGTGTTGTTTTCCTCTTTCTAATATTAGACAGGAAAATCAGTT CCTCTGTTATCTGTTTACCTCCCATCACCTGACAGTAACTTTCATGACATAGGATTCTGC TGCCAAATTTACATCATTAACAATGTGTGCCTTTTTGCAAAACTTCTTATAATTCACTTA TTGTGTTGAAACTAAAATGATTGAAATTTACAGTATTTCTAAGAATGAAATTGTGGTATC TTTTTTTCATATTGATTTTAACAGAAAATTTCAATTTCTAGACATTAGAAATTCCCAACT ACAGAAAACATGTTTGTTTTTAGTGTCAAATTTTTAGCTGCGTTTGTAGCAATCATCAGG TTTGCTAGAAAGGTAACTTTTAATATAGTATCCTGTAAATAAAATACTGTGTTCCCTCTG ATATTCAAATTTTACAACTGCAGTATTCATCTAAAGTAGAAATAATCTGATACTTACTGT AAATACTGCTCTAGCATCTCCATGGACCAAATTTATATTTATAATTGTAGATTTTTATAT TTTACTACTGAGTCAGTTTTCTAGTTCTGTGTAATTGTTTAGTTTAATGATGCAGTTTGT TATCTGGTCTTACTCTGCAAGTCTTCTGATATTGTTTTGTGTTAAGTCATTAACTGTTTC AGCATGTAATTAATTTTAACTTTTATGGAAAATAAAAATACATTTGTTTTGAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 736-855, - strand, RNAz p=0.745257 | |
| 1419-1686, - strand, RNAz p=0.993882 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 736-855, - strand, RNAz p=0.745257 | |
| 1419-1686, - strand, RNAz p=0.993882 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 115-263, gnl|bosTau2|chr4 (47816339-47816191) | |
| 115-263, gnl|canFam2|chr14 (62899270-62899433) | |
| 115-263, gnl|danRer3|chrNA (91315039-91314876) | |
| 115-263, gnl|dasNov1|scaffold_40167 (12393-12545) | |
| 115-263, gnl|echTel1|scaffold_320792 (139115-138952) | |
| 115-263, gnl|fr1|chrUn (132008093-132007914) | |
| 115-263, gnl|galGal2|chr1 (19878626-19878467) | |
| 115-263, gnl|hg17|chr7 (121278425-121278588) | |
| 115-263, gnl|Hg17|chr7 (121278425-121278573) | |
| 115-263, gnl|loxAfr1|scaffold_3399 (61482-61319) | |
| 115-263, gnl|mm7|chr6 (22977661-22977828) | |
| 115-263, gnl|Mm7|chr6 (22977661-22977809) | |
| 115-263, gnl|monDom2|scaffold_22 (24745287-24745127) | |
| 115-263, gnl|oryCun1|scaffold_198161 (8935-8772) | |
| 115-263, gnl|panTro1|chr6 (123614631-123614794) | |
| 115-263, gnl|rheMac2|chr3 (159571603-159571766) | |
| 115-263, gnl|rn3|chr4 (49683157-49683324) | |
| 115-263, gnl|tetNig1|chrUn_random (26037355-26037199) | |
| 115-263, gnl|xenTro1|scaffold_17 (3607603-3607755) | |
| 420-547, gnl|bosTau2|chr22 (30080279-30080406) | |
| 420-547, gnl|Hg17|chr3 (62238254-62238381) | |
| 420-547, gnl|Mm7|chr14 (10036441-10036568) | |
| 705-855, gnl|bosTau2|chr22 (30085433-30085583) | |
| 705-855, gnl|canFam2|chr20 (31789758-31789587) | |
| 705-855, gnl|danRer3|chr11 (3164018-3164189) | |
| 705-855, gnl|dasNov1|scaffold_135554 (7616-7789) | |
| 705-855, gnl|echTel1|scaffold_56691 (2121-2272) | |
| 705-855, gnl|fr1|chrUn (44648863-44648692) | |
| 705-855, gnl|galGal2|chr12 (13067332-13067501) | |
| 705-855, gnl|hg17|chr3 (62243418-62243591) | |
| 705-855, gnl|Hg17|chr3 (62243439-62243589) | |
| 705-855, gnl|loxAfr1|scaffold_35070 (2110-1937) | |
| 705-855, gnl|mm7|chr14 (10042150-10042322) | |
| 705-855, gnl|Mm7|chr14 (10042170-10042320) | |
| 705-855, gnl|monDom2|scaffold_5 (7819715-7819892) | |
| 705-855, gnl|oryCun1|scaffold_203520 (292284-292111) | |
| 705-855, gnl|panTro1|chr2 (64024469-64024642) | |
| 705-855, gnl|rheMac2|chr2 (74105269-74105096) | |
| 705-855, gnl|rn3|chr15 (14459819-14459650) | |
| 705-855, gnl|tetNig1|chr11 (5066150-5066308) | |
| 705-855, gnl|xenTro1|scaffold_1808 (56930-56763) | |
| 987-1853, gnl|bosTau2|chr4 (47803804-47802933) | |
| 987-1853, gnl|Hg17|chr7 (121295085-121295949) | |
| 987-1853, gnl|Mm7|chr6 (22992750-22993601) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-263, gnl|bosTau2|chr4 (47816339-47816191) | |
| 115-263, gnl|canFam2|chr14 (62899270-62899433) | |
| 115-263, gnl|danRer3|chrNA (91315039-91314876) | |
| 115-263, gnl|dasNov1|scaffold_40167 (12393-12545) | |
| 115-263, gnl|echTel1|scaffold_320792 (139115-138952) | |
| 115-263, gnl|fr1|chrUn (132008093-132007914) | |
| 115-263, gnl|galGal2|chr1 (19878626-19878467) | |
| 115-263, gnl|hg17|chr7 (121278425-121278588) | |
| 115-263, gnl|Hg17|chr7 (121278425-121278573) | |
| 115-263, gnl|loxAfr1|scaffold_3399 (61482-61319) | |
| 115-263, gnl|mm7|chr6 (22977661-22977828) | |
| 115-263, gnl|Mm7|chr6 (22977661-22977809) | |
| 115-263, gnl|monDom2|scaffold_22 (24745287-24745127) | |
| 115-263, gnl|oryCun1|scaffold_198161 (8935-8772) | |
| 115-263, gnl|panTro1|chr6 (123614631-123614794) | |
| 115-263, gnl|rheMac2|chr3 (159571603-159571766) | |
| 115-263, gnl|rn3|chr4 (49683157-49683324) | |
| 115-263, gnl|tetNig1|chrUn_random (26037355-26037199) | |
| 115-263, gnl|xenTro1|scaffold_17 (3607603-3607755) | |
| 420-547, gnl|bosTau2|chr22 (30080279-30080406) | |
| 420-547, gnl|Hg17|chr3 (62238254-62238381) | |
| 420-547, gnl|Mm7|chr14 (10036441-10036568) | |
| 705-855, gnl|bosTau2|chr22 (30085433-30085583) | |
| 705-855, gnl|canFam2|chr20 (31789758-31789587) | |
| 705-855, gnl|danRer3|chr11 (3164018-3164189) | |
| 705-855, gnl|dasNov1|scaffold_135554 (7616-7789) | |
| 705-855, gnl|echTel1|scaffold_56691 (2121-2272) | |
| 705-855, gnl|fr1|chrUn (44648863-44648692) | |
| 705-855, gnl|galGal2|chr12 (13067332-13067501) | |
| 705-855, gnl|hg17|chr3 (62243418-62243591) | |
| 705-855, gnl|Hg17|chr3 (62243439-62243589) | |
| 705-855, gnl|loxAfr1|scaffold_35070 (2110-1937) | |
| 705-855, gnl|mm7|chr14 (10042150-10042322) | |
| 705-855, gnl|Mm7|chr14 (10042170-10042320) | |
| 705-855, gnl|monDom2|scaffold_5 (7819715-7819892) | |
| 705-855, gnl|oryCun1|scaffold_203520 (292284-292111) | |
| 705-855, gnl|panTro1|chr2 (64024469-64024642) | |
| 705-855, gnl|rheMac2|chr2 (74105269-74105096) | |
| 705-855, gnl|rn3|chr15 (14459819-14459650) | |
| 705-855, gnl|tetNig1|chr11 (5066150-5066308) | |
| 705-855, gnl|xenTro1|scaffold_1808 (56930-56763) | |
| 987-1853, gnl|bosTau2|chr4 (47803804-47802933) | |
| 987-1853, gnl|Hg17|chr7 (121295085-121295949) | |
| 987-1853, gnl|Mm7|chr6 (22992750-22993601) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| fco (0.78604) | |
| ecc (0.575175) | |
| tra (0.492368) | |
| ece (0.45861) | |
| eye (0.341006) | |
| spc (0.340097) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ret (0.257467) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| hyp (0.142837) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.78604) | |
| ecc (0.575175) | |
| tra (0.492368) | |
| ece (0.45861) | |
| eye (0.341006) | |
| spc (0.340097) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ret (0.257467) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| hyp (0.142837) |