Ss1.1-rspc029_e5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAATCTGATTCCACGTCGTGGTCCTGTCACGCGCAGGCCGTGCTGAAGATCATCAACTA CAGGGATGACGAGAAGTCCTTCAGCCGCCGCATCAGCCACTTGTTCTTCCATAAAGAGAA CGACTGGGGCTTCTCCAATTTCATGGCCTGGAGTGAAGTGACTGATCCTGAGAAAGGATT TATAGATGATGACAAAGTTACTTTCGAAGTCTTTGTACAGGCGGATGCCCCCCATGGAGT TGCGTGGGATTCAAAGAAGCACACGGGCTATGTCGGTTTAAAGAATCAGGGAGCGACTTG TTACATGAACAGCCTGCTGCAGACTTTATTTTTCACAAACCAACTACGAAAGGCTGTGTA CATGATGCCAACAGAGGGCGACGATTCTTCCAAAAGCGTCCCTTTAGCATTACAAAGAGT CTTCTATGAATTACAGCACAGCGATAAGCCCGTAGGAACAAAGAAGCTGACCAAGTCTTT TGGGTGGGAAACTTTAGATAGCTTCATGCAACATGACGTTCAGGAGCTGTGTCGAGTGTT GCTTGATAATGTGGAAAATAAGATGAAAGGCACGTGTGTAGAAGGCACCATACCTAAATT ATTCAGAGGCAAGATGGTGTCGTATATCCAGTGTAAAGAGGTCGACTACCGATCAGATAG AAGAGAAGATTATTACGACATCCAGCTAAGTATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAATCTGATTCCACGTCGTGGTCCTGTCACGCGCAGGCCGTGCTGAAGATCATCAACTA CAGGGATGACGAGAAGTCCTTCAGCCGCCGCATCAGCCACTTGTTCTTCCATAAAGAGAA CGACTGGGGCTTCTCCAATTTCATGGCCTGGAGTGAAGTGACTGATCCTGAGAAAGGATT TATAGATGATGACAAAGTTACTTTCGAAGTCTTTGTACAGGCGGATGCCCCCCATGGAGT TGCGTGGGATTCAAAGAAGCACACGGGCTATGTCGGTTTAAAGAATCAGGGAGCGACTTG TTACATGAACAGCCTGCTGCAGACTTTATTTTTCACAAACCAACTACGAAAGGCTGTGTA CATGATGCCAACAGAGGGCGACGATTCTTCCAAAAGCGTCCCTTTAGCATTACAAAGAGT CTTCTATGAATTACAGCACAGCGATAAGCCCGTAGGAACAAAGAAGCTGACCAAGTCTTT TGGGTGGGAAACTTTAGATAGCTTCATGCAACATGACGTTCAGGAGCTGTGTCGAGTGTT GCTTGATAATGTGGAAAATAAGATGAAAGGCACGTGTGTAGAAGGCACCATACCTAAATT ATTCAGAGGCAAGATGGTGTCGTATATCCAGTGTAAAGAGGTCGACTACCGATCAGATAG AAGAGAAGATTATTACGACATCCAGCTAAGTATAAA |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 13-173, gnl|bosTau2|chr25 (6524489-6524650) | |
| 13-173, gnl|canFam2|chr6 (36331464-36331602) | |
| 13-173, gnl|danRer3|chr8 (31449192-31449330) | |
| 13-173, gnl|dasNov1|scaffold_38634 (7632-7514) | |
| 13-173, gnl|echTel1|scaffold_286900 (12066-12203) | |
| 13-173, gnl|fr1|chrUn (209305803-209305665) | |
| 13-173, gnl|galGal2|chr14 (12119107-12119245) | |
| 13-173, gnl|Hg17|chr16 (8922656-8922494) | |
| 13-173, gnl|hg17|chr5 (107088777-107088915) | |
| 13-173, gnl|loxAfr1|scaffold_10099 (30982-31119) | |
| 13-173, gnl|mm7|chr16 (8383825-8383689) | |
| 13-173, gnl|Mm7|chr16 (8383829-8383669) | |
| 13-173, gnl|oryCun1|scaffold_199879 (29553-29689) | |
| 13-173, gnl|panTro1|chr4 (113078940-113079078) | |
| 13-173, gnl|rheMac2|chr6 (104044897-104045035) | |
| 13-173, gnl|rn3|chr10 (6943130-6943266) | |
| 13-173, gnl|tetNig1|chrUn_random (40290342-40290480) | |
| 13-173, gnl|xenTro1|scaffold_253 (1230660-1230522) | |
| 351-486, gnl|bosTau2|chr25 (6528119-6528254) | |
| 351-486, gnl|canFam2|chr6 (36335523-36335355) | |
| 351-486, gnl|canFam2|chr6 (36335374-36335505) | |
| 351-486, gnl|danRer3|chr8 (31452087-31451874) | |
| 351-486, gnl|danRer3|chr8 (31451889-31452020) | |
| 351-486, gnl|echTel1|scaffold_286900 (14880-14723) | |
| 351-486, gnl|echTel1|scaffold_286900 (14743-14873) | |
| 351-486, gnl|fr1|chrUn (209304550-209304700) | |
| 351-486, gnl|fr1|chrUn (209304756-209304562) | |
| 351-486, gnl|galGal2|chr14 (12128751-12128594) | |
| 351-486, gnl|galGal2|chr14 (12128602-12128733) | |
| 351-486, gnl|hg17|chr16 (8918368-8918532) | |
| 351-486, gnl|Hg17|chr16 (8918516-8918381) | |
| 351-486, gnl|hg17|chr5 (107089114-107089244) | |
| 351-486, gnl|loxAfr1|scaffold_10099 (35949-35788) | |
| 351-486, gnl|loxAfr1|scaffold_10099 (35801-35931) | |
| 351-486, gnl|mm7|chr16 (8380232-8380400) | |
| 351-486, gnl|mm7|chr16 (8380379-8380250) | |
| 351-486, gnl|Mm7|chr16 (8380380-8380245) | |
| 351-486, gnl|monDom2|scaffold_17 (36992112-36991935) | |
| 351-486, gnl|monDom2|scaffold_17 (36991963-36992094) | |
| 351-486, gnl|oryCun1|scaffold_199879 (32833-32665) | |
| 351-486, gnl|oryCun1|scaffold_199879 (32686-32815) | |
| 351-486, gnl|panTro1|chr18 (9050432-9050600) | |
| 351-486, gnl|panTro1|chr4 (113079277-113079407) | |
| 351-486, gnl|rheMac2|chr20 (9054930-9055098) | |
| 351-486, gnl|rheMac2|chr6 (104045232-104045362) | |
| 351-486, gnl|rn3|chr10 (6946708-6946540) | |
| 351-486, gnl|rn3|chr10 (6946561-6946690) | |
| 351-486, gnl|tetNig1|chrUn_random (40291358-40291200) | |
| 351-486, gnl|tetNig1|chrUn_random (40291215-40291346) | |
| 351-486, gnl|xenTro1|scaffold_253 (1226632-1226800) | |
| 351-486, gnl|xenTro1|scaffold_253 (1226781-1226650) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-173, gnl|bosTau2|chr25 (6524489-6524650) | |
| 13-173, gnl|canFam2|chr6 (36331464-36331602) | |
| 13-173, gnl|danRer3|chr8 (31449192-31449330) | |
| 13-173, gnl|dasNov1|scaffold_38634 (7632-7514) | |
| 13-173, gnl|echTel1|scaffold_286900 (12066-12203) | |
| 13-173, gnl|fr1|chrUn (209305803-209305665) | |
| 13-173, gnl|galGal2|chr14 (12119107-12119245) | |
| 13-173, gnl|Hg17|chr16 (8922656-8922494) | |
| 13-173, gnl|hg17|chr5 (107088777-107088915) | |
| 13-173, gnl|loxAfr1|scaffold_10099 (30982-31119) | |
| 13-173, gnl|mm7|chr16 (8383825-8383689) | |
| 13-173, gnl|Mm7|chr16 (8383829-8383669) | |
| 13-173, gnl|oryCun1|scaffold_199879 (29553-29689) | |
| 13-173, gnl|panTro1|chr4 (113078940-113079078) | |
| 13-173, gnl|rheMac2|chr6 (104044897-104045035) | |
| 13-173, gnl|rn3|chr10 (6943130-6943266) | |
| 13-173, gnl|tetNig1|chrUn_random (40290342-40290480) | |
| 13-173, gnl|xenTro1|scaffold_253 (1230660-1230522) | |
| 351-486, gnl|bosTau2|chr25 (6528119-6528254) | |
| 351-486, gnl|canFam2|chr6 (36335523-36335355) | |
| 351-486, gnl|canFam2|chr6 (36335374-36335505) | |
| 351-486, gnl|danRer3|chr8 (31452087-31451874) | |
| 351-486, gnl|danRer3|chr8 (31451889-31452020) | |
| 351-486, gnl|echTel1|scaffold_286900 (14880-14723) | |
| 351-486, gnl|echTel1|scaffold_286900 (14743-14873) | |
| 351-486, gnl|fr1|chrUn (209304550-209304700) | |
| 351-486, gnl|fr1|chrUn (209304756-209304562) | |
| 351-486, gnl|galGal2|chr14 (12128751-12128594) | |
| 351-486, gnl|galGal2|chr14 (12128602-12128733) | |
| 351-486, gnl|hg17|chr16 (8918368-8918532) | |
| 351-486, gnl|Hg17|chr16 (8918516-8918381) | |
| 351-486, gnl|hg17|chr5 (107089114-107089244) | |
| 351-486, gnl|loxAfr1|scaffold_10099 (35949-35788) | |
| 351-486, gnl|loxAfr1|scaffold_10099 (35801-35931) | |
| 351-486, gnl|mm7|chr16 (8380232-8380400) | |
| 351-486, gnl|mm7|chr16 (8380379-8380250) | |
| 351-486, gnl|Mm7|chr16 (8380380-8380245) | |
| 351-486, gnl|monDom2|scaffold_17 (36992112-36991935) | |
| 351-486, gnl|monDom2|scaffold_17 (36991963-36992094) | |
| 351-486, gnl|oryCun1|scaffold_199879 (32833-32665) | |
| 351-486, gnl|oryCun1|scaffold_199879 (32686-32815) | |
| 351-486, gnl|panTro1|chr18 (9050432-9050600) | |
| 351-486, gnl|panTro1|chr4 (113079277-113079407) | |
| 351-486, gnl|rheMac2|chr20 (9054930-9055098) | |
| 351-486, gnl|rheMac2|chr6 (104045232-104045362) | |
| 351-486, gnl|rn3|chr10 (6946708-6946540) | |
| 351-486, gnl|rn3|chr10 (6946561-6946690) | |
| 351-486, gnl|tetNig1|chrUn_random (40291358-40291200) | |
| 351-486, gnl|tetNig1|chrUn_random (40291215-40291346) | |
| 351-486, gnl|xenTro1|scaffold_253 (1226632-1226800) | |
| 351-486, gnl|xenTro1|scaffold_253 (1226781-1226650) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.32041) | |
| pla (0.133672) | |
| spc (0.113366) |